Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq55701 217 3e-51 seq54613 188 1e-42 seq37844 179 7e-40 seq110694 161 2e-34 seq2515 149 1e-30 seq54614 145 1e-29 seq110695 113 9e-20 >seq55701 Length=1651 Score = 217 bits (240), Expect = 3e-51 Identities = 185/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| || || | ||||| ||||||||||||||| ||||| || |||||| Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || ||||||||||| || |||||||| |||||||| || Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || ||||| ||||| || || || ||||||||||| |||||| || ||| ||| Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 249 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||||||||| | ||||||||||| || |||||| Sbjct 250 TCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| |||||||||| ||| ||||| ||||| |||||||| || || | | | || Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||||||| ||||| || || ||||||||||||||||||||||| || || || || Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||||||||| ||||| || || || |||||| || ||| |||||||| || || Sbjct 430 TCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATG 489 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || || || ||||| || || ||||| || Sbjct 490 GTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCATGAT 527 >seq54613 Length=3623 Score = 188 bits (208), Expect = 1e-42 Identities = 184/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| |||| || || ||||| || || || || || || |||| Sbjct 2671 TACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 2612 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||||| ||| ||||||||||| || | | |||||||||||||| Sbjct 2611 AAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAG 2552 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || ||||||||||||||||| ||||| || ||| | Sbjct 2551 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAA 2492 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 |||||||||| || || || || || | || || ||||| ||||||||| | |||| Sbjct 2491 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTTGATAT 2435 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| || |||||| || | || || || |||||||| || |||||||| |||||| Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||||| ||| || ||||||||||| || | || ||||| || || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| || || ||||||||||||||||| |||||| | ||| ||| Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || ||||| | ||||||||||| |||||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 156 bits (172), Expect = 8e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 |||||||| || ||||| || |||||||| | | ||| ||||||| ||| || |||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | || ||||| || || || || || || ||||| || || ||||||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 |||||||| |||||| | ||| ||||| ||||| || || || || || | |||||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 82797 ACAAATATCTGCAT 82810 ||||| |||||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Score = 129 bits (142), Expect = 1e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || ||| || |||||||| || || || || || || || || || || | Sbjct 3346 TACCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCG 3287 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| ||||| || || || ||||| || | ||||||||||||| Sbjct 3286 ATAAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAG 3227 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || ||||||||||| || ||| | |||| Sbjct 3226 GAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCCTCTA 3167 Query 82762 CTTCCAAAGTTATCGT 82777 | |||| ||| || || Sbjct 3166 CCTCCAGAGTAATAGT 3151 >seq37844 Length=1442 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||||| |||||| |||||||| ||||| || || | Sbjct 286 TACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGG 227 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| || || || || || ||||| || ||||| | |||||| ||||||| Sbjct 226 CGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAG 167 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| ||||| ||||| ||||||||||| || || |||||| | Sbjct 166 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAA 107 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || ||||| | ||||||||||| |||||||| Sbjct 106 CTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || ||||| ||||||||||| ||||| || || || || |||| Sbjct 514 TACCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAG 455 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||||||||| || || || ||||| || | ||||||||||| | Sbjct 454 ACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGG 395 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 394 GAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCA 335 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||| || || || || || | ||||| ||||| |||||||| Sbjct 334 CCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq110694 Length=236 Score = 161 bits (178), Expect = 2e-34 Identities = 145/182 (80%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| ||||||| |||||||||| ||| ||||| ||||| |||||||| ||||| Sbjct 55 CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGAC 114 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| ||||| ||||||||||| || || || ||||| |||||||| Sbjct 115 AATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 174 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || ||||||||||| || |||||||| || |||||| || ||| ||| Sbjct 175 ATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCCACT 234 Query 82764 TC 82765 || Sbjct 235 TC 236 >seq2515 Length=4501 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||||| || | |||| || ||||| || || || |||||||||| Sbjct 3695 TACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAG 3636 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || |||||||| || || ||||||||||| | || ||| || ||||| | Sbjct 3635 ACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTG 3576 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||||||||||||||| |||||| | ||| | Sbjct 3575 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCA 3516 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || || || || || | ||||| || || || |||||| Sbjct 3515 CCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq54614 Length=296 Score = 145 bits (160), Expect = 1e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||||| |||||| |||||||| ||||| || || | Sbjct 104 TACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGG 163 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || || || |||||||| ||||| | |||||| ||||||| Sbjct 164 CGAGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAG 223 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| ||||| ||||| ||||||||||| || || |||||| | Sbjct 224 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAAGGTTCAA 283 Query 82762 CTTCCAAAGTTAT 82774 |||| || || || Sbjct 284 CTTCTAATGTGAT 296 >seq110695 Length=218 Score = 113 bits (124), Expect = 9e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||||| |||||||||| ||| ||||| ||||| |||||||| || || Sbjct 97 CCACCTCTTAGACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCGGAC 156 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| ||||| ||||||||||| || |||||||||||||||||||| Sbjct 157 AATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGAGGA 216 Query 82704 AT 82705 || Sbjct 217 AT 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977352098816199