Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq231499 89.7 9e-13 seq342975 84.2 4e-11 >seq231499 Length=289 Score = 89.7 bits (98), Expect = 9e-13 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 182402 ATAATATACCTT----TTATACAGGTAGACGCTCACAATATAGTACCTTGTTGGGAAGCT 182457 |||||||| || || | |||||||||||||||||| | || || ||||||| ||| Sbjct 120 ATAATATATTTTAATATTTTTCAGGTAGACGCTCACAATGTGGTGCCATGTTGGGTAGCG 179 Query 182458 TCTGACAAAGAAGAATACGGTGCAAGAACTTTAAGAAAAAAGATATTTGATAAGTTATAT 182517 ||||| ||| | ||||| || ||||| ||||||| || || | ||||||| || Sbjct 180 TCTGATAAACAGGAATATTCAGCGAGAACAATAAGAAATAAAATCAATTCTAAGTTAGAT 239 Query 182518 GAATATATGACAGAATTTCC 182537 |||||| | || || ||||| Sbjct 240 GAATATCTCACCGACTTTCC 259 >seq342975 Length=610 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 |||||||| || ||| || | |||| || ||| |||| ||||| | || || || Sbjct 145 GGTATATGTGACAATCTATTGACATGTACAGTCCGAGCGTGGGACTTCTCGAAGCCAATT 204 Query 143154 ATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATA 143213 | |||||||| || ||||| | | |||||||||||||||||||| ||||| ||| Sbjct 205 GTATTTTGTCCTGCAATGAACACCAGAATGTGGGAACATCCTATTACGTCTAAACAAATA 264 Query 143214 GATGCTTTAAAACA-TATGGGTTTCATAGAAAT 143245 | || ||||||| | | || ||||| |||||| Sbjct 265 GGTGTTTTAAAAGAGTGGGGCTTTCA-AGAAAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899393944953760