Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq121238 147 2e-30 seq7548 107 2e-18 seq37844 102 8e-17 seq49004 86.0 6e-12 >seq121238 Length=2101 Score = 147 bits (162), Expect = 2e-30 Identities = 717/1125 (64%), Gaps = 33/1125 (3%) Strand=Plus/Minus Query 24878 CTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAACGATGCGCTAAAAACTG-T 24936 ||||||||||| | || || |||||||| | || ||||| || ||| |||| | | Sbjct 1279 CTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAATGA-CAGCTTAAAAGAGAT 1221 Query 24937 GCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCGCGCCGACTTCAAGGTGGC 24996 ||||| ||| | || | || ||||| || |||||||| || ||||| || | Sbjct 1220 CGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCGCGAGGATTTCAAAGTCTC 1161 Query 24997 CATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGGCGTGTCCGCGTGGAACGA 25056 ||||| ||||| ||||| || |||| ||||| || | ||| |||| | ||||| || Sbjct 1160 AATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGGATTGTCTTCATGGAATGA 1101 Query 25057 GCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGCGCG-CCTACCCGCACCTCA 25115 || ||||| ||||| |||||||| ||||| | || || | | || ||||| | | | Sbjct 1100 ACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACAAGCCCGACCCG-ATTTGA 1042 Query 25116 AAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGTTCTTCCACATGCACGACA 25175 | | || ||||| || || || |||||||| | || || |||||| | |||| Sbjct 1041 AGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATTCTTCTTTTTCGTTGACA 982 Query 25176 AGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAGAGTACCTCGTCACCTGGAAGTTC 25234 | | | | | ||| ||| | | || || | |||| || | || ||||| ||| Sbjct 981 AATCTAAGAG-AACACGATTTGTGCAGTCAGTCAAGGAGTTTCTTTTAACATGGAAATTC 923 Query 25235 TTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAGGGCGCCAACCCGGACGTG 25294 || || || || || ||||||||||||| || || ||||| ||||| ||||| ||| | Sbjct 922 TTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGCGCTAACCCTGACCTT 863 Query 25295 GGCAACGCCGAGCGCGATCGCGCCACCTACACTACCCTGTTGGCGGAGCTGCGCGCGATG 25354 || | | | || ||| | | || | || || || | || | |||| Sbjct 862 GGGA--GTCCAG-AAGATGGTGATTGTTATGTAAGTTTGATGAAAGAATTACGTGAGATG 806 Query 25355 CTCGACGCGCTCGGTGCCCACCAAAACCGCCACTACCTGCTCACTAGCGCGATTAGCGCG 25414 ||||| | ||| || | | | ||| | ||| || |||||||| Sbjct 805 CTCGATGAACTCTCAGCTAAGAATGGTAAGAAATACGAATTAACTTCTGCTATTAGCGCT 746 Query 25415 GGCAACGACAAGATCGCCGTCGTCGACTACACTGAGGCGCAAAAGTATCTCGATCTGATA 25474 || || || ||| || || ||||||| |||| ||||| ||| | |||| || Sbjct 745 GGGTGGGATAAAATCCAAGTTGTTGACTACAGCAAGGCTCAAAATTATATGGATCATATT 686 Query 25475 TTCCTCATGTCGTACGATTTTAAGGGCGGCTGGTCGCTCAACGA---GCTCGGTCATCAG 25531 ||| | ||| ||||| || || || | |||||| || || || || ||||| Sbjct 685 TTCTTGATGAGTTACGACTTCAAAGGTGCCTGGTC---AAATGATACTCTTGGACATCAA 629 Query 25532 ACGGCGCTTTACGCGCCCCCGTGGCGGCCCGACGAACCGTACTGCGCGGACCGCGCGGTC 25591 || | | |||||||| | ||| ||| | ||| | ||| | ||| || || Sbjct 628 ACACCATTGTACGCGCCTGCATGGAACCCCAAGGAAACTTACACTTCTGACTTCGGAGTA 569 Query 25592 GAGGCGCTGCTCGCGCAACACGTG---CCCAAGAACAAGATTGTGCTGGGCGTTGCCATG 25648 | || | || || ||| || ||| |||||||| | || ||||||||| Sbjct 568 AAATACTTGTTAGCACAGGGAGTGAATCCTAAG---AAGATTGTAGTAGGTGTTGCCATG 512 Query 25649 TACGGCCGCGGCTGGACGGGCGT---AGCGAGCGACGACAGCGACAATCCATTCTTGGGC 25705 || || || || ||||| || || | ||| |||| ||||||| ||| ||| Sbjct 511 TATGGTCGTGGTTGGACTGGAGTTCATGATTACGAAGACA---ACAATCCCTTCACAGGC 455 Query 25706 ACCGCCACCGGTCCCGTCCCCGGCACCTGGGAGGACGGCGTCGTCGACTATCGACAGATT 25765 | ||| || || || ||| || || ||| | ||||| || |||||||| | | ||| Sbjct 454 AACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACGGAGTGGTCGACTACAGGGAAATT 395 Query 25766 GCTCACAA----CCTCACG--CAGTACACGTACGCGTACGACGACGTTGCCAAGGCGGCG 25819 || | | |||| | ||| || | |||||| | || ||| | || | Sbjct 394 GCCAATGAAGTTGCTCAAGGCAAGTGGGAGTTCCATTACGACAATGTCGCCCAAGCACCT 335 Query 25820 TACATTTATCGCGCATCCGACGGCAACTTGATTAGCTACGACGACGCTGCCTCGGTCACC 25879 ||| | | | |||| || || | | | ||| || | ||| || || | Sbjct 334 TACGTCTTCAGACCATCAACTGGAGACCTTGTAACCTATGATAATGCTAGATCAGTTATT 275 Query 25880 GCCAAGGCCAAATATGTATTGGACCACGAGCTGGCCGGTCTGTTTGCCTGGGAAATTGAC 25939 | |||| || |||||| | || |||| | |||||| ||||| |||||||| ||| Sbjct 274 GAGAAGGGTAAGTATGTAAGAAATAACAAGCTAGGCGGTCTCTTTGCTTGGGAAATCGAC 215 Query 25940 GCCGACAACGGTGACCTGCTCAACGCCATGAACAAGGGTTTGGGC 25984 ||||| |||||||| || || || |||||||||| |||| | ||| Sbjct 214 GCCGATAACGGTGATCTACTGAATGCCATGAACATGGGTCTCGGC 170 >seq7548 Length=2633 Score = 107 bits (118), Expect = 2e-18 Identities = 438/683 (64%), Gaps = 12/683 (2%) Strand=Plus/Minus Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||||| |||||||| ||||| |||| || | ||| || || || | || || ||||| Sbjct 1849 GTAAAGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATA 1790 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 |||| || || || ||||||||||| | ||| |||||| || || || ||| Sbjct 1789 GGAGCTAACAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCC 1730 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||||||| || || || || || |||||| || || || || || || |||| Sbjct 1729 CAGTCCCACAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTC 1670 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | || || || || || | ||||| | || | | || | ||| || || || Sbjct 1669 ACTGGACTCCCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCT 1610 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || | || || || ||||| || || ||||| || || || || ||| Sbjct 1609 TCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCA 1550 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 |||||||| || || | || | |||||| | || || | ||||| || || | || Sbjct 1549 CTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCG 1490 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGG 148727 || |||||||| || || || || | ||| || || ||||| ||| Sbjct 1489 ATAGGCCGGTGCTTCATATT--TGAAGTTTTTGCT-TCAGGGACAGGATAAAAGTTAACA 1433 Query 148728 TCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCGCAGCAATTCAAA 148786 || |||| |||| | ||| | || | ||||| | |||| | || ||| Sbjct 1432 TCAATGACTTTGTTTAAATTTTGAGTGACAATTTTTGTGATTTCTTTTAATTTTTTAAAA 1373 Query 148787 --ATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844 | | ||| | || || | ||| ||| | || || || || |||||||| || Sbjct 1372 TTAAATTGCTTATGTTCAAC-AAACAT--GTTAAGTGCTATGGAAGCAAGATTGCATACT 1316 Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATC 148904 ||| ||||| | |||| | || | ||| | ||| |||||||| ||||| || Sbjct 1315 GCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATA 1256 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 ||| | ||||||||||| ||||| ||||| || || ||||| |||| |||||| ||| Sbjct 1255 GTGCCAAGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGT 1196 Query 148965 CCGCCAGTTTCCACCTGCGTTTC 148987 ||||| ||||| || | ||| Sbjct 1195 GTACCAGTCTCCACTTGGGCTTC 1173 >seq37844 Length=1442 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| ||| | | || ||| | ||||| |||||||| || Sbjct 254 GTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCA-TCCTCCAGCTGCTTACC 196 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || || || ||||| ||||| || || || ||||| |||| || |||| Sbjct 195 AGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATC-TTGGCTT 137 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | || || || || | |||| ||||| || || || | Sbjct 136 TAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTGAGTG 77 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||| || |||||||| Sbjct 76 TCTTTACAAAGATCTGCAT 58 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || |||||||| || || ||||| || || ||| | | | || || || Sbjct 491 AAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCTAG 433 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || || ||||| || || || || || || |||||||| ||| Sbjct 432 TTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGAT 373 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| |||||||| || | || | |||||| || Sbjct 372 CTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTCCC 313 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||||||||| Sbjct 312 AGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq49004 Length=3997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 |||| || | || || || || ||||| || |||| |||||||| | ||| | | Sbjct 311 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 252 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | | ||||| | |||||||||||||| || || | ||||| || ||||| | Sbjct 251 TCAACCAAAATATTGAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAAAG 192 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 ||| || || || || || || ||||||||||| | ||||||| || ||||| || | Sbjct 191 CGATTATACGTTCTGCAAATGTGGCCGTCTTGCTACCAATCCACTGCAATGCCCAGTCTG 132 Query 120845 CCTTTTT 120851 |||| || Sbjct 131 CCTTCTT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481271142514840