Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7548 217 3e-51 seq40558 122 2e-22 seq108352 86.0 1e-11 >seq7548 Length=2633 Score = 217 bits (240), Expect = 3e-51 Identities = 432/639 (68%), Gaps = 3/639 (0%) Strand=Plus/Plus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| ||| ||| || || || ||| |||||||| |||| |||| || | ||| Sbjct 639 TCCTGCTTCCTTATAGCTATGAAAGACGATAGCATTGAAGGCATTTTTGATACTTTAAAA 698 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 || |||| | ||||||||| |||| || || ||| | || ||| || | Sbjct 699 CAATGTGCTTTAATTTCTAAATCTGCTGGTGGCATAGGTTTACATACACATTGCATCAGA 758 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTA 110699 | | || | |||| || | || || | |||| ||| || || |||||||| Sbjct 759 GCCCAGGGTTCTTATATAGCTGGCACTAATGGGGTCTCAAATGGTCTAGTGCCAATGTTG 818 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCA 110756 ||||| | ||| | ||||| | |||||| |||||||||| || | | | || || Sbjct 819 AGAGTGTATAACAATACTGCCAGATATGTAGATCAAGGTGGAAACAAACGTCCCGGTGCA 878 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||| || || | || ||||||||| |||| |||||||| |||||||| | | || Sbjct 879 TTTGCAATTTACTTAGAGCCTTGGCATGCAGACATATTTGAGTTCTTAGATTTAAGGAAG 938 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 || ||| |||||| ||||| | || | |||||||| | ||||| ||||| Sbjct 939 AACACAGGTAAGGAAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGAT 998 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 | || |||||| | || || | ||| | ||| ||| |||||||||||| | | Sbjct 999 CTGTTTATGAAAAGAGTAGAAAAGGATGAAGTTTGGAGTCTAATGTGTCCTCATGACTGT 1058 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 |||||||| |||| |||||| | ||||||||||| || || | |||||||||||| Sbjct 1059 CCTGGTCTCGCTGACTGCTATGGAGAGGAGTTTGAAGAACTATATGCCAAATATGAAAAA 1118 Query 110997 GAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCA 111056 ||| ||| |||||| | ||||||||| | ||| ||| | ||| | Sbjct 1119 GAAAAACGATTTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCC 1178 Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAAT 111116 ||||| || ||||| || || || || |||||||| ||| | ||| | || |||| Sbjct 1179 CAAGTGGAGACTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGGAAGAGTAAT 1238 Query 111117 CAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||| |||| | || || ||||| | ||| ||| | ||| Sbjct 1239 CAAAAGAATCTTGGCACTATTAAATGTAGCAATCTTTGC 1277 >seq40558 Length=3576 Score = 122 bits (134), Expect = 2e-22 Identities = 349/520 (67%), Gaps = 34/520 (7%) Strand=Plus/Minus Query 304982 CGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTT 305041 ||| | ||||||||||| || | || |||| ||||| |||||||| || ||||| ||| Sbjct 3558 CGCTTAAAAGGTAAAGAAGGGAGAATCAGAGGAAATCTTATGGGAAAGCGAGTTGACTTT 3499 Query 305042 AGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTC-ATGAATTAGGAGTTCC 305100 ||| |||| |||||||| |||||| || || ||| | | || || ||||||| || Sbjct 3498 TCTGCCAGAACCGTAATCACTCCTGATCCT-AATTTACGCATAGATCAAGTAGGAGTGCC 3440 Query 305101 AATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTA-ACGAGAAAAATATTAA-A 305158 |||||| ||| ||||||| |||||| ||| | || | || ||| | | Sbjct 3439 TCGCTCTATTGCTCAAAATTTAACATTCCCAGAGCTAGTAACACCATTCAA-TATAGACA 3381 Query 305159 CATTTGAGACGTTGTGTTCTTAATGGAAATAGCA-AGTATCCAGGTGCTCGTGCTGTTAT 305217 | | || |||| |||| || |||||| ||| | ||||||||||| | | | Sbjct 3380 GAATGCAGGAGTTG-GTTCGTAGGGGAAAT-GCACAATATCCAGGTGCAAAATATATAGT 3323 Query 305218 AAAACACAA--GCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGT 305275 | | |||| | |||||| | | | ||| | || || ||| | || ||| Sbjct 3322 CAGAGACAACGGGGAAAGAATAGA-----TCTGAGG--TTTC-ATCCAAAGCCAT-CAG- 3273 Query 305276 AAAATGCTTGAAATTAATGATATTGTTATCA--------GACATTTGAATGACAATGATT 305327 || ||| | ||| |||| |||| | | ||||||| || |||||| Sbjct 3272 ---AT--TTGCATTTACA-ATATGGTTACAAAGTGGAACGCCATTTGAGAGATGATGATT 3219 Query 305328 GGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCA 305387 |||| | |||||| | || || | |||| |||||| |||||||| ||| | |||| Sbjct 3218 TGGTTATTTTCAATCGACAGCCTACTTTGCACAAAATGAGTATGATGGGTCACAGGGTCA 3159 Query 305388 AAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 ||||||| | | | || ||||| | ||| | ||| | | |||| || ||||||| Sbjct 3158 AAGTATTGCCGTGGTCTACGTTTCGTATGAATTTGAGTTGTACTTCGCCATACAATGCGG 3099 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| || || ||||||||| | |||||||||||||| Sbjct 3098 ATTTTGACGGCGACGAAATGAATTTACATGTACCTCAATC 3059 >seq108352 Length=6912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 210/307 (68%), Gaps = 16/307 (5%) Strand=Plus/Minus Query 279353 TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAA 279412 || || || |||||| |||| || || | || || ||| |||||| || |||||| Sbjct 4004 TTGCGTTACGGTAAAGTTATGATAATGGCCGATCAGGATCAGGATGGATCCCATATTAAA 3945 Query 279413 GGATTAATACTTAATTGGGTTGAT-ACTTTCTGGCCAGAATTG-TTGAATCAAAATTTT- 279469 ||| | || | || | | || || | |||||||| | || ||| | ||||| Sbjct 3944 GGACTTATTATAAACTTCATACATCACAAT-TGGCCAGAGCTACTTAAATTACCATTTTT 3886 Query 279470 GTAAGTGTGTTTCA-AACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT--- 279525 | ||| | ||| |||||| ||| |||||||||| ||| ||| | ||||| | Sbjct 3885 GGAAGAAT---TCATAACACCTATTGTTAAGGCAACAAAA---AAAGACAAAGAAATTTC 3832 Query 279526 ATTTTATTCATTGCAGAAGTTTGAACAATGGAAAGATTCAGTTGAGAATTCAGC-CTCAT 279584 ||||||||| || | |||||||| |||||||| | | ||| ||| || | | ||| Sbjct 3831 ATTTTATTCTTTACCTGAGTTTGAAGAATGGAAAAACGAAACTGAAAAT-CATCACACAT 3773 Query 279585 TCCATACCAAGTATTTTAAAGGTTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATT 279644 | ||| ||||| | |||||||| | || |||| | | ||||| || |||||||||| Sbjct 3772 ACAATATAAAGTACTACAAAGGTTTGGGTACCTCCACTTCAAAGGAGGCTAAAGAATATT 3713 Query 279645 TTAAAAA 279651 | |||| Sbjct 3712 TCCAAAA 3706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181403388480101