Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq55701 125 2e-23 seq37844 123 6e-23 seq54613 107 5e-18 seq54614 91.5 3e-13 >seq55701 Length=1651 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || ||||| || || || ||||||||||||||| |||||| ||| | Sbjct 288 TTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTCTGATACAAT 229 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || ||||| || ||||| || ||| || || |||||||| Sbjct 228 TGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCAGCAAAGACT 169 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || || ||||||||| | ||||||||| | ||| | | || ||||| | ||||| Sbjct 168 TATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAATATTCAGAA 109 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 ||| |||||| | ||||| || Sbjct 108 AGAATCTACTTTGCACCTGGT 88 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| |||||| ||| |||| Sbjct 509 AAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGATACAATCGAGAAC 450 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||| || ||||| || ||| || || |||||||| || ||| Sbjct 449 GTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAACAAAGACTAATTTTC 390 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | |||||||| | || ||| | || || || | ||||| || || Sbjct 389 GCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAATATTCAGAAGGAATCA 330 Query 206365 ACTCTTCAC 206373 ||| | ||| Sbjct 329 ACTTTGCAC 321 >seq37844 Length=1442 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || |||||||| ||||| ||||| || ||||| ||| ||| ||| Sbjct 61 CAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCGGAC 120 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| ||||| || ||| || ||| || Sbjct 121 ACTATTGAAAATGTTAAAGCCAA-GATCCAAGACAAAGAGGGTATTCCTCCAGACCAACA 179 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || ||||| || |||||| |||| ||||| | ||| | ||||| ||||| | Sbjct 180 ACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTACAATAT 239 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||||||| | ||| | || ||| | || ||| Sbjct 240 TCAGAAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGA 279 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | ||| || | ||| | ||||||||||||||| | ||| ||||| || | ||| Sbjct 279 TCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGT 220 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| ||||||||||| || ||||| || || |||||||| Sbjct 219 ACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTG 175 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| || ||||| || ||||| | ||| Sbjct 289 CAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCCGAC 348 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| || || || ||| || || || Sbjct 349 ACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAACAG 408 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || ||||| | |||||||| | || || | || |||||| || Sbjct 409 CGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAACATC 468 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| || Sbjct 469 CAAAAAGAGTCTACTCTGCA 488 >seq54613 Length=3623 Score = 107 bits (118), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| |||||| || || || ||||| || ||||||||||| ||| Sbjct 2440 AAAATG---CAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAA 2496 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||| || || | ||| || ||||| ||| |||||||| || ||||| ||| || Sbjct 2497 GCTTCCGATACTATTGAAAATGTAAAAGCCAAA-ATTCAAGACAAGGAAGGCATTCCTCC 2555 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || ||| | | || || || |||||||| || |||||||| | || | | || Sbjct 2556 AGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGA 2615 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| |||| || |||||||| ||||| || || || | || ||| Sbjct 2616 CTACAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGA 2664 >seq54614 Length=296 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 206206 ATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGA 206264 ||||| || ||||| ||| ||| ||||| | ||| || ||||| || ||| ||||| Sbjct 296 ATCACATTAGAAGTTGAACCTTCAGACACTATTGAAAATGTTAAAGCCAA-GATCCAAGA 238 Query 206265 AAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGA 206324 ||||| || ||| || ||| ||| | || || || || || |||||| |||| || Sbjct 237 CAAAGAGGGTATTCCTCCAGACCAACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGA 178 Query 206325 TGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAG 206384 ||| | || | ||||| ||||| | ||||||||||||||| | ||| | || ||| | Sbjct 177 TGGTCGTACGCTCGCCGACTACAATATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCG 118 Query 206385 ACTTCGA 206391 || ||| Sbjct 117 TCTCCGA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176434141674461