Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq121238 131 2e-25 seq54613 105 6e-18 seq37844 98.7 9e-16 seq55701 87.8 2e-12 >seq121238 Length=2101 Score = 131 bits (144), Expect = 2e-25 Identities = 360/541 (67%), Gaps = 8/541 (1%) Strand=Plus/Minus Query 24784 GAAAATAACAAGCGTTTCGAG-AAACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGA 24842 ||||| || |||| ||| || |||| || || ||| |||| | ||||| ||||| || Sbjct 1402 GAAAAAAATAAGCCATTCAAGCAAACCTCTGGA-AAAGTTGTGGGTGCTTATTTCGTAGA 1344 Query 24843 GTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCA 24902 ||||| || |||| || | || | || || | || || ||| | | || Sbjct 1343 ATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTATACCTAATCTTACTCA 1284 Query 24903 CTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAAC 24962 | || |||| ||| | || || |||||||| || || || || ||| || |||| Sbjct 1283 TCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAATGACAG-CTTAAAAG 1225 Query 24963 AGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGG 25021 || || || ||||| | || | ||||| || || ||| ||||| ||||| || | Sbjct 1224 AGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCGCGAGGATTTCAAAG 1165 Query 25022 TAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGA 25081 | | || || || || ||||| || | || ||||| || | ||| | || | |||| Sbjct 1164 TCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGGATTGTCTTCATGGA 1105 Query 25082 ACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACT 25141 | || || ||||||||||| ||||| ||||| ||| || ||| ||| || | | Sbjct 1104 ATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACAAGCCCGACCCGATT 1045 Query 25142 TGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCATTCTTTCACATGCAT 25200 ||||| | || | || || || || ||||| |||| | ||||||||||| | | Sbjct 1044 TGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTG-CTGATCCATTCTTCTTTTTCGTT 986 Query 25201 GACGCGACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAA 25259 ||| | | | | ||| || | | || ||| |||| ||||| || || ||||| Sbjct 985 GACAAATCTAAGAG-AACACGATTTGTGCAGTCAGTCAAGGAGTTTCTTTTAACATGGAA 927 Query 25260 GTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCCTCA 25319 || ||||| || || || || || |||||||| || || |||||||| || || ||| | Sbjct 926 ATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGCGCTAACCCTGA 867 Query 25320 C 25320 | Sbjct 866 C 866 >seq54613 Length=3623 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | ||||| ||||| ||||||||||| | ||| Sbjct 2663 CGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTA 2604 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || || || | | | || | ||| |||||||||||||| |||||| Sbjct 2603 CGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCT 2544 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| ||| | | ||| | |||||||| | || ||||| | Sbjct 2543 TCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAA 2484 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| || || ||||| | ||||||||||| Sbjct 2483 GTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA--ATCTTCGAGCTGTTTACCGG 131987 || ||||||||||| ||||||| | || || |||| |||||| | || ||||| | Sbjct 3080 GATTCTTTTTGAATATTGTAGT--CAGATAGTGTGCGACCATCTTCTAATTGCTTACCAG 3023 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| |||||||| ||||| || || ||||| ||||| || ||||| ||| | Sbjct 3022 CAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTA 2963 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||||| | | || ||||| | || | ||||| ||||| || || | Sbjct 2962 CATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCT 2903 Query 132108 TTATGAAAATCTGCAT 132123 ||| || |||||||| Sbjct 2902 TTACAAAGATCTGCAT 2887 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| |||| ||| | | | || ||||||||||| || |||| | || || Sbjct 3566 CGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGT--CAGATAGTG 3509 Query 131963 CGCGA--ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 |||| |||||| | || ||||| | | |||| |||||||| ||||| || || || | Sbjct 3508 TGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATAC 3449 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 | ||||| || ||||| ||| | | ||| | ||||| | | || ||||| | Sbjct 3448 CCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTA 3389 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || || |||| || |||||||| Sbjct 3388 AAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 >seq37844 Length=1442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||||||||| || ||| || |||||| || || || || | Sbjct 479 GACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCG 420 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||||||||||||||| || || || || || || || || || | Sbjct 419 AAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACA 360 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| |||||||| || | || | ||||| ||||| || || || Sbjct 359 TTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTA 300 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 299 ACAAAAATCTGCAT 286 >seq55701 Length=1651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || ||||| || ||||| || |||||| |||||| || || || |||| Sbjct 329 TTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCTTCTAGTTGCTTTCCGG 388 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | ||||| | |||||||||||||| ||||| ||||| || ||| ||| || | Sbjct 389 CGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTA 448 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | | |||||||| | || | ||||| || || | |||| Sbjct 449 CGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTT 508 Query 132108 TTATGAAAATCTGCATGA 132125 ||| ||| || ||||||| Sbjct 509 TTACGAAGATTTGCATGA 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474491823188760