Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq121238 360 2e-94 seq7548 114 1e-20 seq54613 104 2e-17 seq55701 95.1 1e-14 seq201183 82.4 7e-11 >seq121238 Length=2101 Score = 360 bits (398), Expect = 2e-94 Identities = 934/1396 (67%), Gaps = 52/1396 (4%) Strand=Plus/Minus Query 59754 TCTAAAGGCGGTCGATATAAAAATGACCGTCAAACTATGTAATTCGGACGGATGCACTTC 59813 |||||||| || |||| ||| |||| || |||| || ||| || || |||| || Sbjct 1534 TCTAAAGGTGGAAGATACCAAA-TGACAGTGGAACTTTGCAATGAAGATGGTTGCAGCTC 1476 Query 59814 GAGTCAGCCGGTCGATGTTGTCATTGCAGATACCGACGGCTCTCATCTCGCTCCGTTATA 59873 || | || ||| ||||| | || |||||||| || |||| | |||| | | Sbjct 1475 AAGCGATCCCACCGAAATTGTCGTCGCTGATACCGATGGAAGTCATTTACCTCCCCTGGA 1416 Query 59874 TTATGAATATCAAGAACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGC 59933 ||| | |||| || |||| ||| ||| | |||| ||||| || | Sbjct 1415 ATATACAATGGGAGAAAAAAATAAGCCATTC--AAGCAAACCTCTGGA-AAAGTTGTGGG 1359 Query 59934 CGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCAC 59993 || ||||| || |||||||||||||||||||| || || ||||| ||||| | || | Sbjct 1358 TGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTAT 1299 Query 59994 TCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAA 60053 |||||||| | ||| | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 1298 ACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAA 1239 Query 60054 CGACAGTCTTAAAACC-ATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTC 60112 ||||| ||||||| || || |||||| |||| | |||||||| ||| || | Sbjct 1238 TGACAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCC 1180 Query 60113 GAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAAC 60172 | || || || ||||| ||||| || ||||||||||| || | || ||||| |||| | Sbjct 1179 GCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAG 1120 Query 60173 AAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAAC 60232 | | | | ||||| ||||| |||||||| ||||| || ||||| ||| | ||||| Sbjct 1119 GATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAAC 1060 Query 60233 TGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCC-- 60290 || ||| | | || | | ||||| || || || ||||| || | ||||| Sbjct 1059 AAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCAT 1000 Query 60291 -GTTCTTTTACTTTCACGATACGGATA-AACGAAAGATTTTTGTAGATTCTGTCGTGGAG 60348 ||||||| | || || | | | | ||| | ||||| || || || ||| |||| Sbjct 999 TCTTCTTTTTCGTTGACAAATCTAAGAGAAC--ACGATTTGTGCAG--TCAGTCAAGGAG 944 Query 60349 TTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGA 60408 ||||| || |||||||| ||||| ||||| || ||||| |||||||| || || || Sbjct 943 TTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGC 884 Query 60409 AAAGGTGCCAATCCCAACGTAGGCGACGCC-GAACGCGATCGCGAAACGTACACCATTCT 60467 ||||| || || || || | || || || ||| ||| | || || | | | Sbjct 883 AAAGGCGCTAACCCTGACCTTGG-GAGTCCAGAA---GATGGTGATTGTTATGTAAGTTT 828 Query 60468 GTTGAAAGATTTACGCGAGGCGCTAGATCGATTAACCCTC-GAAACGAATCGAACG---T 60523 | ||||||| ||||| ||| || ||||| ||| ||| | | |||| | | | | Sbjct 827 GATGAAAGAATTACGTGAGATGC----TCGATGAACTCTCAGCTAAGAATGGTAAGAAAT 772 Query 60524 ACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACCG 60583 |||| || || || |||||||| || || |||||| || || ||||||| | Sbjct 771 ACGAATTAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACTACAGCA 712 Query 60584 CTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGGT 60643 |||||| | ||| | ||| ||||| ||||||| ||||| || ||||| ||||||| Sbjct 711 AGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTGCCTGGT 652 Query 60644 CGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAAC 60703 | ||| | ||| || |||| || | | ||||| ||| | | || || || ||| Sbjct 651 CAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAACCCCAAGGAAA 592 Query 60704 ATTATACTACCGATTTTGCCGT-TCGTGCTCTACTCAAGCAAA--AAGTCGAGAATaaaa 60760 ||| ||| | || || | || | || | | |||| | ||| | ||| | Sbjct 591 CTTACACTTCTGACTTCGGAGTAAAATACT-TGTT--AGCACAGGGAGTGAATCCTAAGA 535 Query 60761 aaaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTG 60820 | ||| | || || || |||||||| ||||| || ||||| || || |||| | Sbjct 534 AGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCATGATT---ACG 478 Query 60821 ACGATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACG 60880 | || || ||||| || | || | || | ||||| ||||| || || ||| |||||| Sbjct 477 AAGACAACAATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACG 418 Query 60881 GAGTCGTCGACTATAGAGAGATTTTCAAT-AATTTCGTC--GCCAATAACCCGATGGAAT 60937 |||| |||||||| || || ||| |||| || || || | ||| | ||| | Sbjct 417 GAGTGGTCGACTACAGGGAAATTGCCAATGAAGTTGCTCAAGGCAA------GTGGGAGT 364 Query 60938 ---ATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTCA 60994 ||||||| || || |||| | |||||||| | || || || || || Sbjct 363 TCCATTACGACAATGTCGCCCAAGCACCTTACGTCTTCAGACCATCAACTGGAGACCTTG 304 Query 60995 TCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTA--TAG 61052 | || || || ||| || | || ||| | || || | || |||||| | | || || Sbjct 303 TAACCTATGATAATGCTAGATCAGTTATTGAGAAGGGTAAGTATGTA-AGAAATAACAAG 245 Query 61053 CTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCAT 61112 | | || ||| | || |||||||| ||||||||||| ||||| || || || ||||| Sbjct 244 C-TAGGCGGTCTCTTTGCTTGGGAAATCGACGCCGATAACGGTGATCTACTGAATGCCAT 186 Query 61113 GAACAGCGGTCTCGGC 61128 ||||| ||||||||| Sbjct 185 GAACATGGGTCTCGGC 170 >seq7548 Length=2633 Score = 114 bits (126), Expect = 1e-20 Identities = 661/1037 (64%), Gaps = 33/1037 (3%) Strand=Plus/Minus Query 136972 AGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTA 137031 || || ||||| ||||| || |||| || |||| ||||| | | ||| | || Sbjct 1909 AGGTGATGATTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGAT 1850 Query 137032 GTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATG 137091 || || || || || || || ||||||| | ||| ||||| || | || || ||||| Sbjct 1849 GTAAAGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATA 1790 Query 137092 TAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTC 137151 ||| | ||| | ||||| || ||||| ||| || | || || ||||| | | Sbjct 1789 GGAGCTAACAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCC 1730 Query 137152 CAGTTCCACAGATTGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCG 137210 |||| |||||| ||| | || ||| | | ||||| |||| | || | | || | Sbjct 1729 CAGTCCCACAG----TTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTG 1674 Query 137211 ACTTGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATAC 137269 || | ||||| || |||||| | |||| || | | |||| || | |||| || Sbjct 1673 GCTCACTGGACTCCCTTCATAAGTACTGTATGCACCTT-CTTTTTCTGCTAATTCACAAC 1615 Query 137270 TCTGGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTT 137329 | ||| ||| ||||| ||||||||||| | |||| | ||| | | | |||| Sbjct 1614 TAGCTTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTT 1555 Query 137330 CTTGGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGA 137389 | || ||||| || || || | | || | |||||| | ||| |||| ||| | Sbjct 1554 TCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAA 1495 Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||||||||| | ||| || | |||||| ||| || | | ||||||||||| Sbjct 1494 TACCGATAGGCCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAA 1435 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 | || || | | | || | ||| | ||| || | | | | | || | | || | Sbjct 1434 CATCAATGACTTTGTTTAAATTTTGAGTGACAATTTTTGTGATTTCTTTTAATTTTTTAA 1375 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 ||| || ||| ||| | | |||| | || | || || || || | |||| Sbjct 1374 AATTAAATTGCTTA---TGT---TCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGC 1321 Query 137570 ATACGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTT 137628 |||| ||| ||| | | || | ||||||| |||| || | |||||||||||| | Sbjct 1320 ATACTGCCACTTCATCTTCTGAAG-TGTATTGCACAACCTCAGTGCAAAGATTGCTACAT 1262 Query 137629 CGGATCACTCCCAA-ATTCTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCA 137686 || | | |||| |||||||||||| | ||| ||| || | ||| ||||| | || Sbjct 1261 TTAAT-AGTGCCAAGATTCTTTTGATTACTCTTCCTGTT-ACAAGCATCCTTATACAACA 1204 Query 137687 TATACGGAGTTCCGGTTTCGACTTGAGTCTCAACAATT--TTTCTGTGAAGATCCAACGC 137744 | || || || || || || ||||| | || | |||| ||| | | || || Sbjct 1203 TGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCAT--AACTCTTGAGC 1146 Query 137745 CATAATTTGTTCTCTAAA---CTTGCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAA 137801 | | ||||| | |||| || ||| |||| | | | ||||| || ||| Sbjct 1145 TCTGACTTGTTTTATAAATCGTTTTTCTT---TTTCATATTTGGCATATAGTTCTTCAAA 1089 Query 137802 TTTTTCGCCCATAACAATC-GTTAGACCCGGACACTCGTCGGGACACATCA-ACGACCAT 137859 | || ||||| || || | ||||| ||||| || | |||||||| | || | | Sbjct 1088 CTCCTC-TCCATAGCAGTCAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAA 1030 Query 137860 TTTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGG 137919 ||| ||| | || || |||| ||| |||||| || |||||| |||| ||| || Sbjct 1029 CTTCATCCTTTTCT-ACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGT 971 Query 137920 TCGCGAGCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTA 137979 || | ||| |||| ||||| || | || ||||||| || || ||| || Sbjct 970 TCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATG 911 Query 137980 TCAGCATGCCAAGGCTC 137996 || |||||||||||||| Sbjct 910 TCTGCATGCCAAGGCTC 894 >seq54613 Length=3623 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| |||||| Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| ||||| || ||||||||||| || || |||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | || || ||| | ||||||| | | | | || || ||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTATAAT 3525 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||||| ||||| | || | | || ||||||| Sbjct 3526 ATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGG 3572 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| |||||| Sbjct 2887 ATGCAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 2946 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| ||||| || |||||||| || || || |||||| Sbjct 2947 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 3006 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | || || ||| | ||||||| | | | | || |||||| Sbjct 3007 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTACAAT 3066 Query 25355 ATTCAAAAAGAATC 25368 |||||||||||||| Sbjct 3067 ATTCAAAAAGAATC 3080 >seq55701 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || || || | || || | ||||| ||||| Sbjct 296 ATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTCT 237 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| ||||||||||| || || || |||||| Sbjct 236 GATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCAG 177 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || || || || ||||||| | | | | || |||||| Sbjct 176 CAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAAT 117 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| |||||||| || Sbjct 116 ATTCAGAAAGAATCTAC 100 >seq201183 Length=1230 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 126349 AACATCCTAACGTGAAGGCATTCGTGACTCAGGGCGGAGTACAATCGACGGACGAGGCCA 126408 |||||||||| |||||||||||| | || || ||||| |||||||||| || || || | Sbjct 641 AACATCCTAATGTGAAGGCATTCATTACACAAGGCGGTCTACAATCGACAGATGAAGCAA 700 Query 126409 TAGAAGCGCTCGTGCCGCTGATCGGACTACCAATGATGGGCGATCAAGCTTTCAA 126463 || |||| || || || || ||| |||| ||| | || |||||| ||||| Sbjct 701 TAACAGCGGGTGTACCTCTAATTGGAGTACCTATGTTAGGAGATCAATGGTTCAA 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443115170913120