Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq121238 181 1e-40 seq54613 132 5e-26 seq2515 129 6e-25 seq55701 100 3e-16 seq37844 91.5 1e-13 >seq121238 Length=2101 Score = 181 bits (200), Expect = 1e-40 Identities = 594/913 (65%), Gaps = 29/913 (3%) Strand=Plus/Minus Query 104632 CCCAATCTGTCGCACATGCTTTACGGATTTATACCGATTTGCGGTGGCGACGGCATCAAC 104691 || ||||| | || | || ||||| || || || |||||||| || ||||| ||||| Sbjct 1297 CCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAAT 1238 Query 104692 GAC-GCTCTAAAGACCGTTCCG-GGTAGTTTTGAAGCGTTGCAAAAATCGTGCGCTGGAC 104749 ||| ||| ||||| | || || ||||| |||| || || ||| || || | Sbjct 1237 GACAGCTTAAAAGA--GATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCC 1180 Query 104750 GGGAAAACTTCAAAGTGGCCATTCACGATCCGTGGGCGGCGGTGCAAAAACCGCAAAAAG 104809 | || | |||||||| | || || ||||| ||||| || | |||||||| |||| || Sbjct 1179 GCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAG 1120 Query 104810 GTGCCTCCGCTTGGAACGAACCGTACAAAGGCAATTTTGGTCAGATAATGGCCATCAAAA 104869 | || | ||||| ||||| ||||||||||||||||| || | ||| | ||||| Sbjct 1119 GATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAAC 1060 Query 104870 AAGCCAATCCTCAATTGCGCGTATTGCCCTCGGTGGGCGGGTGGACGCTGTCCGATCC-- 104927 ||||| || | ||| | | ||||| | || ||||||||||| | ||||| Sbjct 1059 AAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCAT 1000 Query 104928 -TTTTTATCACATGCACGACGCTGAAAAACGTGCCACG-TTTGTGGAGTCGGTGCGCGAA 104985 || | | | | || | || | | | |||| |||||| |||| || || Sbjct 999 TCTTCTTTTTCGTTGACAAATCTAAGAGA----ACACGATTTGTGCAGTCAGTCAAGGAG 944 Query 104986 TTTTTGTTGACTTGGAAATTCTTCGATGGCGTCGACATCGATTGGGAGTTTCCGGGCGGC 105045 ||| | || || ||||||||||||||||| || || |||||||||||||| || || ||| Sbjct 943 TTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGC 884 Query 105046 AAAGGCGCCAACCCCAATCAAGGCGACGCGAAACGCGATGCTCTCACGTACGTGTCTCTT 105105 |||||||| ||||| | | || || | | | |||| | || || | | Sbjct 883 AAAGGCGCTAACCCTGACCTTGG-GAGTCCAGA--AGATGGTGATTGTTATGTAAGTTTG 827 Query 105106 TTGAAAGAGTTGCGTTCGATGCTCGACGA----TTTGCAAAAACAAACCAATCGCTCCGA 105161 ||||||| || ||| ||||||||| || | || || | | || | ||| Sbjct 826 ATGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGA-ATGGTAAGAAATACGA 768 Query 105162 GCGTTTGTTGCTCACCAGCGCCATCAGCGCGGGCGACGACAAGATCGCCGTGGTGGATTA 105221 || | || || || ||||| || || || ||| || || || || Sbjct 767 --ATTAACTTCT-------GCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACTA 717 Query 105222 CGGTCACGCTCAAACCTACTTGGATTTGATATTTTTGATGAGTTACGATTTTAAAGGCGC 105281 | | | ||||||| || ||||| || || |||||||||||||| || ||||| || Sbjct 716 CAGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTGC 657 Query 105282 CTGGTCCAACACAAATCTCGGTCATCAGACGGCGTTGTACGCACCCGCGTGGAAACCCAA 105341 |||||| || | ||| || ||||| || | |||||||| || || ||||| ||||| Sbjct 656 CTGGTCAAATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAACCCCAA 597 Query 105342 CGAACGCTACACCACCGATTACGCCGTGAACGCTCTGTTGAAACAGAACGTGCTGCCCCG 105401 ||| ||||| | || | || || || |||| |||| ||| || Sbjct 596 GGAAACTTACACTTCTGACTTCGGAGTAAAATACTTGTTAGCACAGGGAGTGAATCCTAA 537 Query 105402 CAAAATTGTTGTTGGCGTGGCGATGTACGGCCGCGGTTGGATCGGCGTCACCGATTTCCC 105461 || ||||| || || || || ||||| || || ||||||| || || |||| | Sbjct 536 GAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCATGATTACGA 477 Query 105462 GGACGACGATCCGTTCGGCGGAACGGCGCGCGGTCCCGCCGTCGGCACTTGGGAAGATGG 105521 ||| || |||| ||| || | || || || | | || |||||| |||| || Sbjct 476 AGACAACAATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACGG 417 Query 105522 CGTTGTCGATTAC 105534 || ||||| ||| Sbjct 416 AGTGGTCGACTAC 404 >seq54613 Length=3623 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| || || || || || || |||||||| ||||||||||| | Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || |||||||||||||| || ||||| || || Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||||||||| ||| || || | || ||||| | ||| || Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACT 2490 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||||||||||||||| || | ||||| || ||||| ||||||||| Sbjct 2489 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTTG 2439 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || |||| || || || || |||||||| |||||||| || ||||| Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | || || || ||||| || | |||||||||||| || || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| ||||| ||| || || | ||| || || | ||| || Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| || || | || || || || || ||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134520 GATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579 ||||| |||||||| |||||||| | ||| || || || | || || || ||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || || | |||||||||||| || || ||||| ||||| ||||| ||||| ||| || Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 || | ||| || || | ||| || || | ||| || ||||| || || | || || Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 134700 ACGAAAATTTGCAT 134713 || || || ||||| Sbjct 2900 ACAAAGATCTGCAT 2887 >seq2515 Length=4501 Score = 129 bits (142), Expect = 6e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || ||||| | ||||||| ||| || || | |||||||||||||||||||| || || Sbjct 3696 TTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCA 3637 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| | | | || || ||||| || || ||||| ||||| || ||||| || || Sbjct 3636 GACAATG-TACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGG 3578 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || ||||| || ||||| || || ||| || || | || || || | ||| Sbjct 3577 TGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTC 3518 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||| || || |||||||||||||| || | || || ||||||||||||||| || Sbjct 3517 CACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 3463 >seq55701 Length=1651 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || ||||| | || ||||| || ||||| |||||||| Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || |||||||| | | |||||||| || || Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || |||||||| || || || | ||| || || | |||||| Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 249 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | |||||| || || || || | || || || |||||||||||| Sbjct 250 TCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 >seq37844 Length=1442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || ||||| ||||||||||| | |||| | || || || || Sbjct 488 TGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGTTGC 429 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 |||||||| || || | |||||| ||||| || || || || || || ||||| || || Sbjct 428 TTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTA 369 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||||| | ||||| || | |||||||||||| || || Sbjct 368 GCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTCCCAGTA 309 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||| ||||| Sbjct 308 AGTGTCTTAACAAAAATCTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503151013347320