Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq143025 93.3 3e-14 seq52122 89.7 4e-13 seq54961 84.2 2e-11 >seq143025 Length=4707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | |||||| ||| || || Sbjct 2400 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGCGTTAAGCCCTC 2341 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCGTACATCATTCCACAAGTTCCTTTTTGAGCGGT 115150 | ||| |||||||| || | || ||| |||||||| |||||||||||| || Sbjct 2340 GCATGTAAACGGCATATCTTCTTGGCGATACTGGATTCCACAGGTTCCTTTTTGACCGTG 2281 Query 115151 AAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 2280 ACGAGAAGCAAACTTATCCCCAAT 2257 >seq52122 Length=5755 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||||||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 5571 GACTTAGCAGATTGGGAGACATTAAAAGATTGTGAGAAACATTTTATCAAGCAT--GTCT 5628 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || || || || || || || || ||||| || ||||| ||||| | | Sbjct 5629 TAGCATTCTTCGCAGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGGTTCTCAC 5688 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || |||||||| |||||||||||||| |||||| Sbjct 5689 AAGAGGTTCAAGTGACCGAAGCCAGGTGCTTTTATGGTTTTCAAATTGCCATGGAAAATG 5748 Query 43974 TTCATTC 43980 | ||||| Sbjct 5749 TCCATTC 5755 >seq54961 Length=2887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||||||||||||||| |||| || |||||||||| ||| || |||| ||| Sbjct 1880 CCCAAAATTGTAAATGGTCCACAAATTTTGGATAAATATGTCGGTGAAAGTGAAGCGAAT 1821 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACG 19529 | | | ||||||||||| |||||||| ||| | ||||| Sbjct 1820 ATTAGGAGATTGTTTGCTGATGCTGAAGAGGAAGAGAAACG 1780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395732792374705