Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq35560 154 2e-32 seq108352 104 3e-17 >seq35560 Length=9305 Score = 154 bits (170), Expect = 2e-32 Identities = 225/316 (71%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | ||||| || ||||| |||| Sbjct 1579 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACTACGAAGTCCTCGGGCGCGTCCTGC 1638 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | |||||||| || || ||||||||||||||| Sbjct 1639 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCATGGCCCCAGTCGCGCTTGCTG 1698 Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668 || ||||| |||||||||| || ||||| ||| || || | ||| Sbjct 1699 TCGAGGTTACCGAGCTCGAGGTGCGACATGAGGCCGAGATGT--ATCTTGGCGACGCCCC 1756 Query 124669 GTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAA 124728 | || ||||||||||||||||| | ||||| ||| ||||||||||||||| | Sbjct 1757 GCGTGATCTTGCGCGTCACAAAGTTCTCTCCGCGGCGCGGGCTCTCGTGGTTGAACAGCA 1816 Query 124729 TGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAA 124788 ||| | ||||| ||||| ||||||| ||||||||||||| ||||| || || Sbjct 1817 GGCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTTTACTACTATCCAGTAGCCGT 1876 Query 124789 AGAGCTT-GGACACGC 124803 | ||||| | |||||| Sbjct 1877 ACAGCTTCGCACACGC 1892 Score = 152 bits (168), Expect = 6e-32 Identities = 220/309 (71%), Gaps = 11/309 (4%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | || |||||||| || || ||| Sbjct 1579 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCCACTACGAAGTCCTCGGGCGCGTCCTGC 1638 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| ||||| || |||| || ||||||||||||||| Sbjct 1639 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCATGGCCCCAGTCGCGCTTGCTG 1698 Query 159064 TCCATGTTCCCGAGCTCGA----TGACTT---TTCCAGACTTTTTCCACTCAGCCAGACC 159116 || | ||| |||||||||| ||| | | ||| | | || || | || Sbjct 1699 TCGAGGTTACCGAGCTCGAGGTGCGACATGAGGCCGAGATGTAT----CTTGGCGACGCC 1754 Query 159117 GAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAG 159176 |||||||||||||||||||||| | ||||||| || ||| ||||| ||||| Sbjct 1755 CCGCGTGATCTTGCGCGTCACAAAGTTCTCTCCGCGGCGCGGGCTCTCGTGGTTGAACAG 1814 Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCC 159236 | |||| | || ||||||| | || | ||||||||| ||| ||||||||| || Sbjct 1815 CAGGCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTTTACTACTATCCAGTAGCC 1874 Query 159237 AAAGAGCTT 159245 | ||||| Sbjct 1875 GTACAGCTT 1883 >seq108352 Length=6912 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| |||||||| || | ||||| ||||| || || Sbjct 1945 GTGAATATGTAACGGGGGCTCGCAGCGTCCTTGCCCCCGGACAGACGAGTACCAAACTGA 2004 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| || |||| ||||| | |||||| | |||||| |||||||||||||||| || Sbjct 2005 CCACGGGGTTCCAGAAGGTTAATGTTGTTCGACCCCACATAGTTTTGAGCCAAGTTCACT 2064 Query 117425 ATCGT 117429 || || Sbjct 2065 ATTGT 2069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544782660411800