Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq54613 185 1e-41 seq37844 176 5e-39 seq55701 168 8e-37 seq2515 168 8e-37 seq110694 138 1e-27 seq54614 138 1e-27 seq110695 96.9 4e-15 >seq54613 Length=3623 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| || || || || ||| | || ||||| | | Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| || ||||| ||||| || || || || ||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||||||| | || |||| ||| || ||| | ||||||||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTATAAT 3525 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||| |||||||| || ||||||| || || || Sbjct 3526 ATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGG 3572 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || ||||| || || || |||||| | || ||||| | Sbjct 2442 AATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCTTC 2501 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || || |||||||| |||||||| || ||||||||||| || Sbjct 2502 CGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCA 2561 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||||||||| |||||| | || |||| ||||| || | ||||| || Sbjct 2562 ACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTACAA 2621 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||||||||| ||||||| || ||||| Sbjct 2622 CATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 Score = 165 bits (182), Expect = 9e-36 Identities = 153/194 (79%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27439 ACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAG 27498 ||||||||||| ||||| ||| || ||| | ||||| |||| | |||||||| || || Sbjct 3151 ACTATTACTCTGGAGGTAGAGGCATCTGACACCATTGAAAATGTTAAGGCTAAGATCCAA 3210 Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||||||||| || |||||||| || || || || |||||||| || Sbjct 3211 GACAAGGAGGGTATTCCTCCAGATCAACAGCGTCTTATCTTCGCAGGCAAGCAACTGGAA 3270 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| |||||| || | ||||| || |||||||||| ||||| ||||| |||| | Sbjct 3271 GATGGCCGTACCTTATCGGACTACAACATCCAAAAGGAGTCCACCCTTCACTTAGTACTC 3330 Query 27619 CGTCTTCGCGGTGG 27632 ||||| || || || Sbjct 3331 CGTCTGCGAGGAGG 3344 Score = 147 bits (162), Expect = 2e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || || || ||| | || ||||| | | Sbjct 2887 ATGCAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 2946 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| || ||||| ||||| || || || || ||| Sbjct 2947 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 3006 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||||||||||||| | || |||| ||| || ||| | ||||| ||| Sbjct 3007 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTACAAT 3066 Query 27586 GTCCAAAAGGAATC 27599 | ||||| ||||| Sbjct 3067 ATTCAAAAAGAATC 3080 >seq37844 Length=1442 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| ||||| || || || |||||| | ||||| ||| ||| Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | |||||||| || || ||||||||||| ||||| ||||| || Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAA 405 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||| || |||| || ||||| | ||||| || Sbjct 406 CAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAAC 465 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || ||||| ||| |||| | |||||||| ||||| Sbjct 466 ATCCAAAAAGAGTCTACTCTGCATTTAGTGCTTCGTCTTCGTGGTGG 512 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || || || || || | || ||||| | Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 118 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAA 177 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||||||||| ||||||||||| || ||||||| |||||| || || ||||| ||| Sbjct 178 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTACAAT 237 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||| | || | || |||||||| || || || Sbjct 238 ATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGAGGAGG 284 >seq55701 Length=1651 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| ||||||||||||||| | || || || | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| ||||||||||| || ||||| ||||| ||||| || Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||||||||| ||||| || || |||| || || ||| | ||||| || Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || ||||| ||| | || || || | ||||| | ||||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| || || || | ||||| || || || || | || || || | Sbjct 527 ATCATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCT 468 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||||| || | || | ||||| || ||||||||||| ||||| ||||||||||| Sbjct 467 TCTGATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGAT 408 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || | |||||||| || || |||||||| || |||| ||||| | |||||||| Sbjct 407 CAACAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTAT 348 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| | || |||||||| ||| | || |||| |||| ||| | |||||| Sbjct 347 AATATTCAGAAGGAATCAACTTTGCACTTAGTGCTGCGCCTTAGGGGTGGA 297 >seq2515 Length=4501 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| ||||| || || || ||||| |||||||| || | Sbjct 3466 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTC 3525 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || ||||| || || || ||||| || ||||| |||||||| Sbjct 3526 TGATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCA 3585 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || | || |||||||||||||| || || |||| ||||| | | || ||||| Sbjct 3586 GCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAA 3645 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| | ||||| || |||| |||||||| || Sbjct 3646 CATTCAAAAGGAATCCACATTGCATCTTGTGCTGCGACTTCGCGGAGG 3693 >seq110694 Length=236 Score = 138 bits (152), Expect = 1e-27 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | ||||| || ||||||||||| || || |||||||||||||| Sbjct 222 TGATACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGTATTCCTCCAGACCA 163 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || ||||||||||| ||||||||||| |||| || || | | |||||||| Sbjct 162 ACAGAGGCTGATTTTTGCTGGAAAGCAACTCGAAGATGGCCGCACATTGTCTGACTATAA 103 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| |||||||| ||| | || |||| |||||| | | |||||| Sbjct 102 TATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTTTAAGAGGTGGA 54 >seq54614 Length=296 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| |||| | || || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 266 ATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAACAACGT 207 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 |||||||||||||||||||| || ||||||| |||||| || || ||||| ||| | || Sbjct 206 CTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACGCTCGCCGACTACAATATTCAG 147 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| | || | || |||||||| || || || Sbjct 146 AAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGAGGAGG 106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||| |||||| | ||||| ||| ||| Sbjct 104 ATGCAGATTTTTGTTAAGACACTAACTGGGAAGACCATTACTTTAGAGGTGGAGCCAGCC 45 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| |||| | |||||||| || || ||||||||||| Sbjct 44 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGG 1 >seq110695 Length=218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||||||||| || || | || ||||||||||| |||||||| || |||| || || Sbjct 218 ATTCCTCCAGATCAACAAAGACTGATTTTTGCTGGAAAGCAACTGGAAGATGGGCGCACA 159 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | ||||||||| |||| |||||||| ||| | || |||| |||||||| | ||| Sbjct 158 TTGTCCGACTATAATATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTCTAAGAGGT 99 Query 27631 GGA 27633 ||| Sbjct 98 GGA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567774365099920