Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq121238 277 2e-69 seq54613 154 1e-32 seq37844 118 9e-22 seq54614 91.5 1e-13 seq2515 86.0 5e-12 seq279177 82.4 7e-11 >seq121238 Length=2101 Score = 277 bits (306), Expect = 2e-69 Identities = 793/1206 (66%), Gaps = 24/1206 (2%) Strand=Plus/Plus Query 53367 ACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGCAAACAA 53426 |||| ||| || ||||||| ||||| ||||| || |||||||||||||| ||||| | Sbjct 176 ACCCATGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCAAGCAAAGAG 235 Query 53427 TCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTCTAGCACGGAATCGATGC--TG 53484 || || || | ||| | | ||||||| ||||| || | || || || | || | Sbjct 236 ACCGCCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGA-TCTA-GCATTA 293 Query 53485 TCGTAACTGATTAAATCGCCAGAGTTTTTAT----TGAATACAAACGCTGCTTTGGCTGT 53540 || || | | | || |||| || || |||| || | | ||||| ||| Sbjct 294 TCATAGGTTACAAGGTCTCCAG----TTGATGGTCTGAAGACGTAAGGTGCTTGGGCGAC 349 Query 53541 AGTGTCGTAAGTGTAATCGTA-TTGA--TGGCCAATTTTTTCGTCAATTTTTCGGTAATC 53597 | |||||||| | | || | ||| || ||| || | | |||||| | ||| || Sbjct 350 ATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGTAGTC 409 Query 53598 AACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACGGATT 53657 || |||||||||| ||| || || | ||||| ||||| || || ||||| ||||| Sbjct 410 GACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGATT 469 Query 53658 GTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGAGAAC 53717 || || ||| | |||||||||||||| || || ||||| || || || | || Sbjct 470 GTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACACCTACTAC 529 Query 53718 AATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCCGTGTA 53777 ||| || | | | ||| ||| | | ||| || | | || | ||||| Sbjct 530 AATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTA 589 Query 53778 ATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCGGTGTT 53837 | || |||| ||| | |||||||| | | ||||||||||| | | || Sbjct 590 AGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATT 649 Query 53838 TGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGTTGGGC 53897 |||||| || ||||| || || || ||| || ||||| |||| || | ||| || Sbjct 650 TGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGC 709 Query 53898 GTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTCAACTC 53957 | || |||| || || |||||||| || || || || || ||| || || Sbjct 710 CTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTC 769 Query 53958 GAACTTTCGT-CCAGTTTCCAATTCCAATTGATCCAACATTTGTCGCAACTCTTTTAACA 54016 | | |||| | ||| | | | | || ||| | ||| | || || ||||| | || Sbjct 770 GTA-TTTCTTACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCA 828 Query 54017 ACACCACATACGTTAAACTATCTTTTTGAGGATCGCCCACGGAC-GGATTGGCACCGTTT 54075 | ||||| || ||||| | || | |||| || | || || || || || Sbjct 829 AACTTACATAACAATCACCATCTTCTGGA----CTCCCAAGGTCAGGGTTAGCGCCTTTG 884 Query 54076 CCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCAATAGGAAT 54135 || ||||| ||||||||||||| || |||||||| || |||||||| || || || || Sbjct 885 CCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAAC 944 Query 54136 TCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGTAAAACGGA 54195 || || || | |||||| | | | || || || |||| | | || ||| Sbjct 945 TCCTTGACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACGAAAAAGAAGAATGGA 1004 Query 54196 TCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCGCTTTTTTC 54255 || | | |||||| || || || || || | | || | | ||| |||| ||| Sbjct 1005 TCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTTG 1064 Query 54256 ACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGACGCCTTTT 54315 | | ||| | || |||||||||||||| || ||||| ||||| | || | ||| || Sbjct 1065 AGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTT 1124 Query 54316 TGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCGACCGGCCA 54375 || |||||||| | || ||||| ||||||||||| | ||||| |||||| ||||| Sbjct 1125 TGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCG 1184 Query 54376 GCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGTCATTTATT 54435 ||||||| |||| |||| |||||||| || |||||| |||||||| || Sbjct 1185 CTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATA 1244 Query 54436 CCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAGGCACGGGC 54495 ||||| |||||||||||||| | || ||||| | ||||| || | |||||| | || Sbjct 1245 CCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGGTATAGGT 1304 Query 54496 ACTTTGTCCATTGGAAAATTTCGTCCG-TACACTCCCCATTCTACAAAATAGGCGGCCAC 54554 | |||| || |||||| | | || || ||||||||||| ||||| || |||| Sbjct 1305 ATACGATCCACAGG-GAATTTCCTAGGATAAACACCCCATTCTACGAAATAAGCACCCAC 1363 Query 54555 AACTTT 54560 |||||| Sbjct 1364 AACTTT 1369 >seq54613 Length=3623 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || || | |||||| | ||||| ||| | ||| Sbjct 2443 ATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCTTCC 2502 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||| |||||||| || || |||||| Sbjct 2503 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 2562 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || ||||| ||||| | || |||| || |||||| Sbjct 2563 CAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTACAAC 2622 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||| | || ||||| |||| ||||| || Sbjct 2623 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGGTAT 2672 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || ||| | ||||| ||| | || Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||||||||| || || ||||| ||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||| ||||| || || | || || || || Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTATAAT 3525 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | ||| |||| ||||| |||| || ||||| Sbjct 3526 ATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGGCAT 3575 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || ||| | ||||| ||| | || Sbjct 2887 ATGCAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 2946 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 2947 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 3006 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||||| ||||| || || | || || ||||| Sbjct 3007 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTACAAT 3066 Query 27168 ATTCAAAAGGAGTC 27181 |||||||| || || Sbjct 3067 ATTCAAAAAGAATC 3080 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||||||||| || || || | || ||| | ||||| | || || || || |||| Sbjct 3152 CTATTACTCTGGAGGTAGAGGCATCTGACACCATTGAAAATGTTAAGGCTAAGATCCAAG 3211 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 |||| || || || || || |||||||||||| | || | ||| ||||| ||| |||||| Sbjct 3212 ACAAGGAGGGTATTCCTCCAGATCAACAGCGTCTTATCTTCGCAGGCAAGCAACTGGAAG 3271 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 | | ||| | || || |||||||| ||||||||||| ||| | || || || | | Sbjct 3272 ATGGCCGTACCTTATCGGACTACAACATCCAAAAGGAGTCCACCCTTCACTTAGTACTCC 3331 Query 27202 GTTTGCGGGGTGGCAT 27217 || |||| || || || Sbjct 3332 GTCTGCGAGGAGGTAT 3347 >seq37844 Length=1442 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || || | ||||| ||||| || Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||||||||| || || || || || ||| Sbjct 118 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAA 177 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | ||| || || || |||| || || || | |||| ||||| Sbjct 178 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTACAAT 237 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || || ||||| |||||| | || || || || Sbjct 238 ATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGAGGAGGTAT 287 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || || | |||||| | || ||||| || || Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || || || || || |||||| Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAA 405 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| ||| | ||||| | ||| | || || |||||| Sbjct 406 CAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAAC 465 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| || | ||||| || | ||| | || ||||| || Sbjct 466 ATCCAAAAAGAGTCTACTCTGCATTTAGTGCTTCGTCTTCGTGGTGGTAT 515 >seq54614 Length=296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 ||||| ||||| || ||| | ||||| | || ||| || || ||||||||||| || Sbjct 287 GAAGTTGAACCTTCAGACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGT 228 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || || ||||| ||| |||| | || || || || |||| || || || Sbjct 227 ATTCCTCCAGACCAACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGTACG 168 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | |||| ||||| ||||| || ||||| || || || ||||| |||||| | || || Sbjct 167 CTCGCCGACTACAATATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGAGGA 108 Query 27213 GGCAT 27217 || || Sbjct 107 GGTAT 103 >seq2515 Length=4501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || | ||||| ||||| |||||| | || Sbjct 3467 ATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTCT 3526 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| || ||||| || ||||| || || Sbjct 3527 GATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAG 3586 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || || | ||||| | || | || ||||| ||| Sbjct 3587 CAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAAC 3646 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||||||||| || || || ||| | || |||| Sbjct 3647 ATTCAAAAGGAATCCACATTGCATCTTGTGCTGCG 3681 >seq279177 Length=202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 |||||| |||||||| ||||| ||| | |||||||| || ||| ||| | ||| || Sbjct 18 AGGTTGCATGTGGTCCATTTGTGGTATCCACGATCAGGGTTGGGCAGAGAGACCAGTTTT 77 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTA 135743 ||||| ||||| || |||||||||||||| |||| Sbjct 78 CGGCAAAATTCGATACATGAACTATGACGGATGTA 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433035956765213