Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq54613 89.7 4e-13 >seq54613 Length=3623 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||| ||||| ||||| || ||| ||||| | || || ||| Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 2500 TCCGATACTATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAG 2557 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| ||||| ||||| || || | || | | || || | Sbjct 2558 ATCAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACT 2617 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || | ||| | || ||||| |||| || || Sbjct 2618 ACAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354319525313907