Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq54613 156 1e-32 seq37844 152 1e-31 seq2515 152 1e-31 seq55701 116 9e-21 seq54614 114 3e-20 >seq54613 Length=3623 Score = 156 bits (172), Expect = 1e-32 Identities = 142/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| |||||||| ||||||||||| || |||| | ||| | |||||| Sbjct 3329 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCT 3270 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||||||||||||||| || ||||| || ||||||| || |||||||| Sbjct 3269 TCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTCT 3210 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||| || || ||||| ||||||||||| || ||||| ||||| || || Sbjct 3209 TGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCCTCTACCTCCAGAGTAATAGT 3151 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| ||||| |||||||| || ||||| || | || || | |||||| Sbjct 3557 AGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGACCATCT 3498 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||| || || |||||||| || || || ||||| || | || || ||||| Sbjct 3497 TCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTGTCT 3438 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || ||||| || || |||||| |||||| || | |||||| || Sbjct 3437 TGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTT 3378 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||||||||| | |||||| Sbjct 3377 TTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| ||||||||||| || || | ||| || | |||||| Sbjct 2654 AGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGGCCATCT 2595 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | ||||| || || || || | |||||||| || ||||||| ||||||||||| Sbjct 2594 TCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 2535 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || ||||| || || || || |||||| || | ||| || || Sbjct 2534 TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTAATGGTT 2475 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || || ||||| | ||||||||| Sbjct 2474 TTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210921 GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCG 210980 || |||||||| || || || || | || || | |||||||| | ||||| || || Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 |||||||| || || || ||||| || | || || ||||| ||||| || ||| || Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 ||||| || || |||||| |||||| || | |||||| || || || ||||| |||||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 211101 ACAAACACCTGCAT 211114 ||||| | |||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| |||||||| ||||||||||| || |||| | ||| | |||||| Sbjct 2870 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGCCCATCT 2811 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTG 210994 |||||||||||||| || |||||||| || || Sbjct 2810 TCCAGCTGCTTGCCAGCAAAGATAAGACGCTG 2779 >seq37844 Length=1442 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| |||||||| || || || || || || || || | ||||| |||||||| Sbjct 261 GTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTG 202 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || ||||||||||| ||||||| || || ||||| |||||||| Sbjct 201 CTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTT 142 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| || |||||| || | ||||| || || || || Sbjct 141 GGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGT 82 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||||||||| | |||||| Sbjct 81 GAGTGTCTTTACAAAGATCTGCAT 58 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || ||||| ||||||||||||||||| || || | ||||| Sbjct 507 ACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGT 448 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||||||||||||||| || ||||| || || |||| || Sbjct 447 GCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACC 388 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || ||||| || ||||| | || ||||| | Sbjct 387 CTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAA 328 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || || ||||| ||||| | |||||| Sbjct 327 AGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq2515 Length=4501 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || ||||| || | ||||| || ||||| ||||||||||| | | || Sbjct 3687 CGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTA 3628 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| |||||||| || || ||||| | ||||| ||||| || |||| ||| Sbjct 3627 CGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCT 3568 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || |||||||| ||| || ||||| || || |||||| ||| ||||| || Sbjct 3567 TCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGG 3508 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| || ||||| || || | |||||| Sbjct 3507 GTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq55701 Length=1651 Score = 116 bits (128), Expect = 9e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || ||||| | ||| || ||||| || || || || || | || || | |||||| Sbjct 84 TAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATC 143 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| |||||||| || || || ||||| | ||| || || || |||| || || || || Sbjct 144 TTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATC 203 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || || || ||||| || || ||||| ||| || || | ||| || || Sbjct 204 CTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGT 263 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || ||||||||||| | |||||| Sbjct 264 CTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 >seq54614 Length=296 Score = 114 bits (126), Expect = 3e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| |||||||| || || || || || || || || | ||||| |||||||| Sbjct 129 GTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGCGTACGACCATCCTCCAGCTG 188 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || ||||||||||| ||||||| || || ||||| |||||||| Sbjct 189 CTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTT 248 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || ||||| || |||||| || | ||||| Sbjct 249 GGCTTTAACATTTTCAATAGTGTCTGAAGGTTCAACTTCTAATGTGAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153868664513465