Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq54613 134 9e-27 seq37844 120 2e-22 >seq54613 Length=3623 Score = 134 bits (148), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || ||||| || ||||| ||||| || ||| | |||||||| | Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || ||| |||||| ||||| |||||| ||||| ||||| | || |||||| Sbjct 2500 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2559 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATT 23785 ||||| ||||| || ||||| || || ||| | ||||| | || |||||| || | Sbjct 2560 CAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTT--CTGACT 2617 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| ||||| ||||| || | ||| |||| | | ||||||| || Sbjct 2618 ACAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || ||| | || ||||||||||||||| | || || || ||||| ||||||||| Sbjct 3211 GACAAGGAGGGTATTCCTCCAGATCAACAGCGTCTTATCTTCGCAGGCAAGCAACTGGAA 3270 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || ||| || |||||||| ||||| |||||||| | || ||||| | Sbjct 3271 GATGGCCGTACCTTATCGGACTACAACATCCAAAAGGAGTCCACCCTTCACTTAGTACTC 3330 Query 23824 AGGTTGCGAGGAGG 23837 | |||||||||| Sbjct 3331 CGTCTGCGAGGAGG 3344 >seq37844 Length=1442 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || || || || ||||| || ||| | || || || | | Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | |||| | || | | ||||| || ||| | || |||||||| Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGTATTCCCCCAGATCA 404 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| ||||| ||||| | ||||| | || ||||| Sbjct 405 ACAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAA 464 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||||||||| || | |||||||| Sbjct 465 CATCCAAAAAGAGTCTACTCTGCATTTAGT 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336544127796428