Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2515 161 2e-34 seq55701 138 3e-27 seq37844 138 3e-27 seq54614 127 5e-24 seq54613 123 6e-23 seq110 120 7e-22 seq110694 111 4e-19 seq335283 87.8 4e-12 >seq2515 Length=4501 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| ||| ||||| || | |||||||| ||||| | || ||||| | ||| || Sbjct 3687 CGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTA 3628 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||||||||||| ||||| ||||| | |||||| ||||| || ||||||||| Sbjct 3627 CGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCT 3568 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| || ||| ||| || || || |||| |||||| || | Sbjct 3567 TCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGG 3508 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||| | || || | ||| | ||||||| Sbjct 3507 GTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq55701 Length=1651 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||| || | ||| | ||| ||||| || || | ||| || || | ||| || | Sbjct 306 AAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACG 365 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||||||| ||||| || ||||| || |||| |||||| || || ||||| || || Sbjct 366 CCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTC 425 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||| || |||||| ||| || ||||| || || || | |||||| || || || Sbjct 426 TTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGT 485 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || || ||||||| ||| | |||||| Sbjct 486 GATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq37844 Length=1442 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| || ||||| || | |||||| ||||| | ||| | ||||| || ||||| Sbjct 261 GTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTG 202 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || || ||||||||||| || |||||||| || |||||||||||||| Sbjct 201 CTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTT 142 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||| || ||||| || | ||| || ||||| ||||| || || || || Sbjct 141 GGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGT 82 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| || | ||||| Sbjct 81 GAGTGTCTTTACAAAGATCTGCAT 58 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||| || |||||||||| ||||| || | || || Sbjct 507 ACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGT 448 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| ||||| || ||||||||||| || ||||| || || |||||||| Sbjct 447 GCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACC 388 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| ||| ||| || ||||| | | ||||| ||||| Sbjct 387 CTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAA 328 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || || || || || Sbjct 327 AGTAATGGTTTTCCCAGT 310 >seq54614 Length=296 Score = 127 bits (140), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| || ||||| || | |||||| ||||| | || | ||||| || ||||| Sbjct 129 GTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGCGTACGACCATCCTCCAGCTG 188 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || ||||||||||| || |||||||| || |||||||||||||| Sbjct 189 CTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTT 248 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || ||| ||| || |||||||| | ||| || ||||| ||||| Sbjct 249 GGCTTTAACATTTTCAATAGTGTCTGAAGGTTCAACTTCTAATGTGAT 296 >seq54613 Length=3623 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || |||||||||||||| | ||| || || | | || Sbjct 3566 CGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTG 3507 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 3506 CGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCC 3447 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| ||| || || ||| ||| || || || |||| ||| || ||||| Sbjct 3446 TCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAA 3388 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | || |||| || | ||||| Sbjct 3387 AGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || ||||||| ||||| || | || || | |||||| Sbjct 3329 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCT 3270 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||||||||| || ||||| || || |||||||| ||||||||| Sbjct 3269 TCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTCT 3210 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 |||||||| ||| ||| ||| |||||||| || Sbjct 3209 TGGATCTTAGCCTTAACATTTTCAATGGTGTCAGA 3175 Score = 111 bits (122), Expect = 4e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || ||||||| ||||| || | | || Sbjct 2663 CGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTA 2604 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| ||||| ||||| || || | |||||||| || || ||||| ||| Sbjct 2603 CGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCT 2544 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || ||| || || ||| ||| || || || || | ||| || || || Sbjct 2543 TCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAA 2485 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || ||||| | ||||| | || | |||||||| Sbjct 2484 AGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 111 bits (122), Expect = 4e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 ||||||||||| | |||||| || | | || | |||||||||| ||||| ||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCAC 225638 |||||||| || || || || || || || || || ||||||||||| ||| || || || Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGAT-TTTAGCTTTTAC 2962 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | ||| || || || |||| ||| || ||||| ||||| || || || || | || || Sbjct 2961 ATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTT 2902 Query 225699 TATGAACACTTGCAT 225713 || || | ||||| Sbjct 2901 TACAAAGATCTGCAT 2887 >seq110 Length=15307 Score = 120 bits (132), Expect = 7e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| ||| ||| |||| || ||||| ||| |||| || Sbjct 13292 ATTAATTGGTGATGATCAAATTTATAACACCATTGTTACAGCTCATGCTTTTATTATAAT 13233 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || |||| || || || || ||||||||||| || || ||||| Sbjct 13232 TTTTTTTATAGTTATACCTATTATAATTGGAGGATTTGGAAATTGATTAGTCCCCTTAAT 13173 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || || |||||||| ||||| || | | || |||||||| |||||| | ||||| Sbjct 13172 ATTAGGAGCCCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGACTTCTACC 13113 Query 7716 GCCTTCCTTATTTCTA 7731 || || ||| || || Sbjct 13112 CCCCTCATTAATTTTA 13097 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||||||||||||||| ||||||||||| || | ||||| || || || | Sbjct 12700 ATACTTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCCCCTC 12759 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| || |||||||| |||||| ||||||| |||||||||| Sbjct 12760 CTGCGGGGTCAAAAAAAGAAGTATTTAAATTTCGGTCAGTTAAAA 12804 >seq110694 Length=236 Score = 111 bits (122), Expect = 4e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||| || |||| ||| || || | ||| || | |||||||| || || Sbjct 78 GTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGACAATGTGCGGCCATCTTCGAGTTG 137 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || | |||||||| || ||||||||||| ||||| || ||||| Sbjct 138 CTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATCTT 197 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 | ||| ||| |||||| || || || | |||||| || Sbjct 198 TGCCTTAACATTTTCGATTGTATCAGAAGCTTCCACTTC 236 >seq335283 Length=379 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 7758 TCAAATTAAACCACATACTCCACCGCTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTA 7817 || ||||||||||||| ||||||||||| | | | |||||| || ||||||||||| Sbjct 379 TCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTA 320 Query 7818 ACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACGCGTTAGCT 7861 ||||||||| |||| | | |||| || |||| | ||||||||| Sbjct 319 ACCTTGCGGCCGTACTCCCCAGGCGGTCGATTTAATGCGTTAGCT 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1187095724404254