Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7548 520 1e-142 seq139650 102 1e-16 seq52122 91.5 2e-13 seq105385 87.8 2e-12 seq49004 87.8 2e-12 >seq7548 Length=2633 Score = 520 bits (576), Expect = 1e-142 Identities = 1027/1501 (68%), Gaps = 29/1501 (2%) Strand=Plus/Minus Query 76764 ATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAG 76823 |||||| || || | || ||||| || | | | ||| |||||||| |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 76824 TACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAA 76883 ||||| || ||||||| |||| |||| ||| |||||| || || ||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 76884 TAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTA 76943 || |||| | || | ||| || || | || |||||||| || ||||||||||||||| Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 76944 TCAGCCGCCATTTTTATAATGGTC-TTTTGA--GGAATTTCCCAAATAGTTTTGAAAACT 77000 ||||||||||||| ||| || | |||| | | ||| ||||| | |||||| | | Sbjct 2077 TCAGCCGCCATTTGTAT---GGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAA 2021 Query 77001 TGTTTGATATCATCTGGAAGGTTTGTATTTT---GAATGGAACCACCATCTGATATAATT 77057 | | | || || | |||| ||| | ||| | || || || | ||| ||| Sbjct 2020 TCTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATA 1961 Query 77058 GTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAA-CTCTAAGGAGATGAGG 77116 ||| || ||||| |||| ||| || | | ||||| | ||| || | || || ||| | Sbjct 1960 AGATTTTTCATATCTTCATCCCATAAAT-CGGCTCTGGTCAAATCTGTCAGAAGGTGATG 1902 Query 77117 ATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGG 77176 ||| |||| ||||||||||||| || ||||| | |||||| || ||| | || Sbjct 1901 ATTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGG 1842 Query 77177 TTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCAC 77236 ||| | ||| ||| |||| || | |||||| || ||||| || ||||||||||| || | Sbjct 1841 TTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAA 1782 Query 77237 CAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA 77296 ||||| | ||| | | ||||||| || ||||| ||||| || ||| ||||| Sbjct 1781 CAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 77297 AAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA 77356 || || | ||| ||||| | ||| |||||||| || || | || || || Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCT--CACTGGA 1664 Query 77357 -TCCATT-ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 ||| || ||| || || | |||||| |||| |||| ||||||||| ||||| ||| Sbjct 1663 CTCCCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAAT 1604 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || || |||||||| ||||| || || | | ||| || | ||||| ||| || Sbjct 1603 GCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCG 1544 Query 77475 AACGGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 | || || | | | | | ||| | |||||| | ||||||||| |||||||| ||||| Sbjct 1543 TAAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGG 1485 Query 77534 TCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAAT 77593 | || || |||| ||| |||| ||||| || | ||||||| | |||| || || | Sbjct 1484 CCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGAC 1425 Query 77594 TTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAAT-- 77651 ||| || | |||| | || | ||| | || |||| ||| ||||| |||| Sbjct 1424 TTTGTTTAAATTTTGAGTGACAATTTTTGTGATTTCTTTTAATTTTTTAAAATTAAATTG 1365 Query 77652 CTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCA 77711 ||| || | |||||||||||| | ||||| || || ||||| || ||||| || ||| Sbjct 1364 CTT--ATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCA 1307 Query 77712 TTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | | | ||||| | | ||| || || ||||| |||||||| |||||||| ||| Sbjct 1306 TCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGA 1247 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 || | ||| || ||||| | || || | |||||||| | || | || || || || Sbjct 1246 TTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTC 1187 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATCATAGATTTGT 77889 || | || | ||| ||||| || ||||| | ||||| |||| | | | | ||| | Sbjct 1186 TCCACTTGGGCTTCTATAATTGACTTCCATA--ACTCTTGAGCTCTGAC--TTGTTTTAT 1131 Query 77890 A--TCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATC 77947 | ||| | ||| ||||||||| | |||||| |||||| || ||||| | || Sbjct 1130 AAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGTC 1071 Query 77948 ATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCG 78007 | | | ||||| || |||| || ||||| | ||| | |||| | | |||| Sbjct 1070 AGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTCTACTCT 1011 Query 78008 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| ||||| |||||||||| |||| ||| || |||| | ||| |||||| Sbjct 1010 TTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTC 951 Query 78068 ATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 78127 || ||||| ||||| | | ||| | ||||| | || || | |||||| || |||| Sbjct 950 CTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCTCTAA 891 Query 78128 ATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTT 78187 || ||||| | | || || ||||| || || || ||||||| ||||||||| || || Sbjct 890 GTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATT 831 Query 78188 ATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 ||||| |||||||||||||| | | ||| || || ||||| || |||| ||||| Sbjct 830 GTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATATA 771 Query 78248 A 78248 | Sbjct 770 A 770 Score = 105 bits (116), Expect = 9e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| ||||| || ||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||| ||||| || |||| ||| |||| | | ||| || |||| ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq139650 Length=2376 Score = 102 bits (112), Expect = 1e-16 Identities = 243/367 (66%), Gaps = 3/367 (1%) Strand=Plus/Minus Query 170967 TTATGATTCCTATAAATCCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTA 171026 |||||| ||| || ||||||||||| ||| | || | || ||| | | ||| | | Sbjct 489 TTATGACTCCAGTATTACCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTATGA 430 Query 171027 AAAAATTTCCATCTGGAATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTC 171086 |||||| |||| ||| |||||| | ||| ||||||||||||| ||||| || ||||| | Sbjct 429 AAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGTCC 370 Query 171087 ATAAAAACAATAATAATTTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATA 171146 ||||||| ||| | || | ||| | | | | |||||||| | | || | Sbjct 369 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 310 Query 171147 AAGTTGATTATCTCAAGGAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCT 171206 ||||| | || | || || || | ||||| |||||| |||| | | || | Sbjct 309 AAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGATTT 250 Query 171207 TGGATTCCGAAATTGTTCTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAAGTC 171263 ||||| | ||| | || | || |||| ||| || ||| | || ||||| | Sbjct 249 TGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTACAT 190 Query 171264 TAGGAATACACAAAAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATT 171323 |||| || |||||| | ||| | ||| ||||| | | ||||| | | ||||||| Sbjct 189 TAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGATT 130 Query 171324 GTTTATA 171330 | ||||| Sbjct 129 GCTTATA 123 >seq52122 Length=5755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||||||||||| || |||||||| ||||| || |||||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || || || |||||||||||||| ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 >seq105385 Length=1203 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 78753 ttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 || || || || || |||| ||| |||| |||||||| ||||| | ||||||||||||| Sbjct 558 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATAGCATAATCA 617 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 ||||| | || || ||| ||||| ||||| || || | | |||| | ||| |||| Sbjct 618 GGATGATCAGTGGTCTTAGTAGCTGCAATTTCAGCAGCAAGATTATCAAGCTCAGCAGTT 677 Query 78873 GTGACCCCATTATATA 78888 || || ||| ||||| Sbjct 678 GTTACACCAGAATATA 693 >seq49004 Length=3997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/250 (69%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 48137 TAAACATGCAAAATCACAATGAAGAC-CTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 |||| || | |||| || |||| | | ||||| ||| ||| | ||| || || | Sbjct 336 TAAAAATACTAAATTAC--TGAACATACCTCATCCCTAGAAATAAGTTCATTGCTGAAAG 279 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254 | | |||||||| || || |||||||| | ||||||||||| || |||| | || || Sbjct 278 TCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGC-AAAGCTGCCCGAG 220 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 || ||||| || || || |||||||| ||| | | | ||| | | |||| ||| Sbjct 219 AAAAATATTCCCTCAACCGCCGCAAAAGCGATTATACGTTCTGCAAATGTGGC--CGTCT 162 Query 48315 TG-----TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 || |||||| | |||||| || ||||||||||| ||||| || | || || | Sbjct 161 TGCTACCAATCCACTGCAATGCCCAGTCTGCCTTCTTCTTAACACACGGTAGAGTCTCAA 102 Query 48370 TAGCATTAAA 48379 ||||||| || Sbjct 101 TAGCATTGAA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691579772830240