Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq32923 134 1e-26 seq54613 125 6e-24 seq55701 95.1 1e-14 >seq32923 Length=5192 Score = 134 bits (148), Expect = 1e-26 Identities = 203/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 104975 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105034 |||||||||||| | ||||| |||| ||||||| | || || | | || Sbjct 1783 ATGCCCGGCCCTGTGCACCCGCGCTACGACTCCGAGGCGGCTCGCCTCCGCAGCTTCAGC 1724 Query 105035 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105094 || ||||| | ||||| || || | ||| ||| || | |||||||| || || | |||| Sbjct 1723 GACTGGCCTCGCAGTTTGAAGCAGAAGCCCGAGGAACTCGCCGAAGCGGGATTCTTCTAC 1664 Query 105095 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105154 |||||| | || || ||| || || || || || ||||||||||| ||||| |||| Sbjct 1663 ACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGCCTCAAGGACTGGGAG 1604 Query 105155 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105214 |||| ||||| ||||||||| | || || || ||||| || || || | | ||| | Sbjct 1603 AACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTTCAG 1544 Query 105215 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCG 105263 |||||||| || | || || || ||| |||||| | || || |||| Sbjct 1543 CTGGTCAAGGGCCGAGAGTATGTCCAGAAGGTGATCACAGAGGCGTGCG 1495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 || || ||||| || | || |||| || ||||| ||||||||||| || ||||| ||| Sbjct 2017 AATGGCTTCTATTACCTAGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 1958 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 | ||| ||| | | ||||||||| || ||| || || | || |||||||| ||| Sbjct 1957 CTTATGAAATGGGTTGCGGGCGACGATCCCGCCCAGGACCACCAGCGGTGGGCGCCCCAG 1898 Query 104855 TGCCCGTTTTTGCG 104868 ||||| ||| |||| Sbjct 1897 TGCCCCTTTCTGCG 1884 >seq54613 Length=3623 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| |||||||||||||| | || || ||||||||||| ||||| ||| | Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||| || ||| | |||||| |||||| ||||| |||||| |||| ||| Sbjct 2500 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2559 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111274 |||||| | | |||| ||| || || ||||| |||||| | | ||| | | || | Sbjct 2560 CAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTT--CTGACT 2617 Query 111275 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || || ||||| || ||||| || ||| |||| |||||||||| ||||| Sbjct 2618 ACAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || | || || ||||| || || | ||| ||| || Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | |||||| ||||| |||||||| || | || ||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || | ||||| | ||| || || ||||| |||||| || | ||||| | || |||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTAT--CTGACTATA 3523 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| ||||||||||| || || ||| | || |||||||||| || |||| Sbjct 3524 ATATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGGCA 3574 >seq55701 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || ||||| || ||||| |||||||| || ||||| |||| | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | ||||| ||| ||| |||||||| ||| |||| |||||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || |||| || || || ||| | |||||| || || | || |||||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || | || |||||| |||| || | ||||| Sbjct 344 ATTCAGAAGGAATCAACTTTGCACTTAGTGCTGCGCCTTAGGGGTGG 298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| || || | || ||||| || ||||| ||||| |||| | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || |||||| || ||||| ||| ||||| ||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||||| ||||||| ||| || || || | |||||| ||| | | || || || Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || ||||||||||| | || | || | |||||| | ||||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419982398129416