Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq121238 206 2e-48 seq2515 114 9e-21 seq54613 100 2e-16 seq37844 95.1 9e-15 >seq121238 Length=2101 Score = 206 bits (228), Expect = 2e-48 Identities = 783/1211 (65%), Gaps = 47/1211 (4%) Strand=Plus/Plus Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793 |||| || | |||| || ||||||| || | | || ||||| || |||||||||||| Sbjct 166 TGTTGCCGAGACCCATG-TTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCC 224 Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853 || |||| ||||| || ||| || | | ||||| || ||||| | | || || Sbjct 225 CAAGCAAAGAGACCGCCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGAT 284 Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907 || | | || ||||| || || || | |||| |||| | ||||| || ||||| Sbjct 285 CTAGCATTATCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACGTAAGGTGCTTGG 344 Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGGATACCGG-TTCGTGATGTCTTTG 5955 || || |||||||| | | ||| | || || | || || || Sbjct 345 GCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTG 404 Query 5956 TAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAG 6015 ||||| || || |||| || ||| | |||||| || || || || || ||||||||||| Sbjct 405 TAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 464 Query 6016 GGATTGTTGT--TGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGC 6073 |||||||||| | || || || | |||| ||| || | || |||||||| || | Sbjct 465 GGATTGTTGTCTTCGTAATCATGA--ACTCCAGTCCAACCACGACCATACATGGCAACAC 522 Query 6074 CCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGG 6133 | || || | || || || ||||| | ||| | || | || || |||| | | Sbjct 523 CTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTACTCCGAAGTCAG 582 Query 6134 TGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGAT 6193 ||||| |||| |||||||||||| |||||||||| || || || |||| ||| Sbjct 583 AAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAG 642 Query 6194 CGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACT 6253 || |||||||| || ||||| ||||| |||| | |||||||||||||| ||| | Sbjct 643 TATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAAT 702 Query 6254 CCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTG 6313 || || | ||| || ||||| | ||||| || | || |||| || || | Sbjct 703 TTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAG 762 Query 6314 TGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGC 6373 | | || || ||| | || || | || ||||| | | || Sbjct 763 TTAATTCGTATTTCTTACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTT 822 Query 6374 CCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGG-CAGGATTGGCT 6432 || | | ||| | || || ||| ||| ||| |||| |||| || || Sbjct 823 TCATCAAACTTACATAACAATCACCATCTTCTG-GAC---TCCCAAGGTCAGGGTTAGCG 878 Query 6433 CCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCC 6492 || ||||| || || || |||||||| || || || || |||||||| ||||| ||| Sbjct 879 CCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAA 938 Query 6493 AGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAA 6552 ||||| || | ||| || || || |||| ||| |||| || | | Sbjct 939 AGAAACTCCTTGACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACGAAAAAGAAG 998 Query 6553 AAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGGATTGTGT 6612 || ||||| |||||||||||||| || ||||| || || ||| || ||| | | | Sbjct 999 AATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAAT-CGGGTCGGGC 1057 Query 6613 TTTCGTATG---GCCATAAGCTGACCGAAATTACCCTTGTA-----CATTTCCGAGTAGG 6664 || || || | ||| | || || ||||| || ||||| || |||| | || Sbjct 1058 TT--GTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCA-TTCCATGAAGA 1114 Query 6665 CCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGA 6724 | | || | || |||||||||| ||| ||||| ||| || || || || |||| Sbjct 1115 C----AATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGA 1170 Query 6725 AGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCA 6784 | || || || || || |||||||| | |||| ||| ||| | || ||| | Sbjct 1171 AATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTA 1230 Query 6785 GAGC-GTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTG 6843 ||| ||| |||||||| || || ||||| || || | ||| ||||| || ||||| || Sbjct 1231 -AGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTA 1289 Query 6844 AGATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACG 6903 ||||| || || || || | || | || || | || ||||||||||| || ||| Sbjct 1290 AGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACG 1349 Query 6904 AAGTAAGCTCC 6914 || ||||| || Sbjct 1350 AAATAAGCACC 1360 >seq2515 Length=4501 Score = 114 bits (126), Expect = 9e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || ||| || || | ||| |||||||| ||||| ||||| | | | || Sbjct 3684 AGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGT 3625 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || |||||||| || ||||||||||| || ||||| |||| || | ||||||| Sbjct 3624 CCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCC 3565 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || || ||||| || | || | || || || | || ||||||||| | ||| Sbjct 3564 TTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTA 3505 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAAA 44350 || || || ||||| |||||||| ||||| |||||||| || || || || Sbjct 3504 ATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGGGACTGTAA 3454 >seq54613 Length=3623 Score = 100 bits (110), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || || ||||| || ||||||||||||||| Sbjct 2679 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTT 2620 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | ||| || | || || | ||||| || ||||| |||||||| || || Sbjct 2619 GTAGTCAGAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTG 2560 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||||| ||| | |||||||| || || || || | || | || || |||| Sbjct 2559 ATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGA 2500 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| ||||| || || ||||| || || || || || || ||||| Sbjct 2499 AGCTTCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | | || | |||||| ||| |||||||||||||||||| || Sbjct 3348 CATACCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTC 3289 Query 44167 GGCGAGTTGG--CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 ||| || || | || ||||| ||||| || || ||||| | |||||| |||||| Sbjct 3288 --CGATAAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCT 3231 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||| ||||| || ||||| ||| | || | |||||||| | | Sbjct 3230 GGAGGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCC 3171 Query 44285 TCCACCTCCACCGTAATCGT 44304 || ||||||| ||||| || Sbjct 3170 TCTACCTCCAGAGTAATAGT 3151 >seq37844 Length=1442 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| |||||||||||||| || | || ||| | || || || ||||| || || || Sbjct 477 CTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAA 418 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||| ||||||| || | ||| ||||| || ||||| ||| | | Sbjct 417 GATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATT 358 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || |||||||| | |||||||| | ||||| || || || || || ||||| || Sbjct 357 TTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAAC 298 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 297 AAAAATCTGCAT 286 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | ||| |||| ||| | || ||| || || || ||||| || Sbjct 288 CATACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTC 229 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| || | || ||||||||||| || || || || | ||| || || |||| Sbjct 228 GGCGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGG 169 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGTTCCTATGGTGTCGGCGGATT 44285 ||| | ||| || || || ||||| |||| || || | || ||||| | | || Sbjct 168 AGGAATACCCTCTTTGTCTTGGATCTT-GGCTTTAACATTTTCAATAGTGTCCGAAGGTT 110 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || || || || ||||| ||||| || ||||| ||||| Sbjct 109 CAACTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358429627984197