Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2515 158 3e-33 seq55701 136 9e-27 seq54613 111 4e-19 seq37844 102 2e-16 seq10767 102 2e-16 seq110694 100 7e-16 >seq2515 Length=4501 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || ||||| ||||||||| ||| || Sbjct 3470 CAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTCTGAT 3529 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || || || ||||| || || || ||||||||| Sbjct 3530 ACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAA 3589 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || ||||| ||||||||| | || | | ||||||||| | Sbjct 3590 CGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAACATT 3649 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| ||| |||||||||| || |||| Sbjct 3650 CAAAAGGAATCCACATTGCATCTTGTGCTGCGACT 3684 >seq55701 Length=1651 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| ||||| | || |||||| || || Sbjct 521 CAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCTGAT 462 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || |||||||||||||||||| || || ||||| || || ||| Sbjct 461 ACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAACAA 402 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||||||||| || || |||||||| | || | | || ||||| | Sbjct 401 AGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAATATT 342 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || |||||||| |||| Sbjct 341 CAGAAGGAATCAACTTTGCA 322 >seq54613 Length=3623 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || ||||| ||||| ||||| | || || ||| ||| || Sbjct 3349 CAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCTGAT 3408 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || |||||||| || ||||| || || ||||| Sbjct 3409 ACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAGCAG 3468 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || | |||||||| | || || | || ||||| | Sbjct 3469 CGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTATAATATT 3528 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 3529 CAAAAAGAATCCACCCTTCATCTGGT 3554 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || ||||| ||||| | || || ||| ||| || Sbjct 2890 CAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCTGAT 2949 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || |||||||| || ||||| || || ||||| Sbjct 2950 ACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAGCAG 3009 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || || | |||||||| | || || | || || || | Sbjct 3010 CGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTACAATATT 3069 Query 178104 CAAAAAGAATC 178114 ||||||||||| Sbjct 3070 CAAAAAGAATC 3080 >seq37844 Length=1442 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || ||||| || || | |||||||| | ||| Sbjct 289 CAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCCGAC 348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| || || || || || || || || Sbjct 349 ACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAACAG 408 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || || || |||||||| | || || | || || ||| || Sbjct 409 CGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAACATC 468 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || || |||||| Sbjct 469 CAAAAAGAGTCTACTCTGCAT 489 >seq10767 Length=4660 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| ||||| ||| | | ||| Sbjct 3753 CAGATTTTCGTGAAAACACTGACGGGTAAGACCATCACCCTTGAGGTCGAACCCGCGGAC 3812 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||||| ||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 3813 ACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAAGAGGGAATTCCCCCAGACCAGCA 3871 >seq110694 Length=236 Score = 100 bits (110), Expect = 7e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 177966 GAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGA 178025 || |||||| || || || ||||| || || || ||||||||||||||||||||| Sbjct 236 GAAGTGGAAGCTTCTGATACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGT 177 Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || ||||| ||||| || | || || || || ||||| || ||||||||||| | || Sbjct 176 ATTCCTCCAGACCAACAGAGGCTGATTTTTGCTGGAAAGCAACTCGAAGATGGCCGCACA 117 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 | | || ||||| |||| || |||||||| |||| Sbjct 116 TTGTCTGACTATAATATCCAGAAGGAATCAACTTTGCA 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198244675570754