Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq830 98.7 9e-16 >seq830 Length=194395 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || || || || || |||||| | Sbjct 122839 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAACCGTCT 122780 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| ||||| ||||| ||||| | || |||||| Sbjct 122779 GATACAATCGAGAACGTTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCAG 122720 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || ||||| ||||| ||| |||||||| || |||| || | || ||||| Sbjct 122719 CAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTACAAC 122660 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || |||||| |||| ||||| || || ||||| Sbjct 122659 ATCCAGAAGGAATCAACCCTTCACTTGGTTTTACGTTTGCGTGGAGG 122613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || ||||| |||||| ||| ||||| | Sbjct 124453 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCT 124394 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| || || ||||| | || |||||| Sbjct 124393 GACACAATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 124334 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||| |||||||| || ||| || |||| ||||| Sbjct 124333 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAAC 124274 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||| || | || || || | || ||||| Sbjct 124273 ATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGTCTTCGTGGAGG 124227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || ||||| || || ||| ||||| | Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| || || ||||| | ||| |||||| Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || |||||| |||||||| || ||| || | ||||||||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| ||||| || |||| || || | || ||||| Sbjct 123571 ATCCAGAAGGAATCCACTCTCCATTTGGTATTGCGTCTTCGTGGAGG 123525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||||||||| || ||||||||||| ||| ||||| | Sbjct 124225 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCT 124166 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||| || || ||||| | || |||||| Sbjct 124165 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 124106 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || |||||| |||||||| || ||| || | || ||||| Sbjct 124105 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAAC 124046 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || ||||||||||| ||||| |||| || || Sbjct 124045 ATCCAAAAGGAATCTACCCTTCATTTGGTATTGCG 124011 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| ||||| || |||||||| ||| ||| ||||| | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| |||||| || || |||||| | || |||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || ||||| |||| ||| || || || | ||||||||| Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAAT 123116 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| | || |||| || || | ||||| || Sbjct 123115 ATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGG 123069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| || |||||||||||| ||| ||||| | Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCT 124622 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || || ||||| | || ||||||| Sbjct 124621 GACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 124562 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || || || ||| |||||||| || ||| || | || ||||| Sbjct 124561 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124502 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||| |||||||| || ||||| |||| || || Sbjct 124501 ATTCAAAAGGAATCCACCCTTCATTTGGTATTGCG 124467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428311725395750