Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1314 125 6e-24 seq429 120 3e-22 seq830 113 4e-20 >seq1314 Length=49468 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||||||||||| || ||||| || || |||||||| ||| Sbjct 22006 TACCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 22065 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||||||||| || || ||| |||| | ||| |||||||| || | Sbjct 22066 AGAGGGTGCGTCCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGG 22125 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| || || || || | ||||| || || | | ||||| Sbjct 22126 GGATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGA 22185 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || || || || || ||||| || ||||| ||||| Sbjct 22186 CCTCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq429 Length=41586 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || || |||||||| || || ||| || ||||||| Sbjct 1128 ACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCG 1187 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||| |||||||| || || || |||||||||||| Sbjct 1188 AGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 1247 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||| | ||| | || || Sbjct 1248 ATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTA 1307 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||||||| ||||||||||| Sbjct 1308 CCCGTCAAAGTTTTTACGAAAATCTGCAT 1336 >seq830 Length=194395 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| || | |||||| || ||||| || |||||||| || || | ||| Sbjct 123083 CAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCATC 123142 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | |||||| || ||| |||| | ||| |||||||| ||||| || || |||||||| Sbjct 123143 CTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTC 123202 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | |||||| ||||| | || | || || | || | || || || | ||| | | Sbjct 123203 TTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGT-TCAACTTCTAAGGTGATGG 123261 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || |||| |||||||||||||| ||||| Sbjct 123262 TTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | ||| ||||| || | || || || |||||||||||||| || Sbjct 124453 TACCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCG 124512 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| | ||| || | || || |||||| |||| | ||| || ||||| || | Sbjct 124513 ACAGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTG 124572 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| ||||| ||| || | ||| | ||||| | || | || Sbjct 124573 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGT-TCA 124631 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || |||| ||||| ||||| |||||||| Sbjct 124632 ACTTCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| ||||| |||| || || || || || |||||||| || Sbjct 123295 TACCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 123354 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||| | ||| || | |||||| || || | || | ||| |||||||| || | Sbjct 123355 ACAGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGG 123414 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| || || || | ||| | ||||| | ||| | Sbjct 123415 GGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAA 123474 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || || | ||||| |||||||||||||| Sbjct 123475 CCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||| | |||| || ||||| || |||||||| ||||| || ||| | |||| Sbjct 122856 AACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTACCATCC 122915 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || || || | || | ||| ||||| || ||||| || || || |||||| Sbjct 122916 TCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 122975 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| || || | || | ||||||| ||| ||||| | || | || Sbjct 122976 TGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTGATAGTC 123035 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| |||||| || ||||||||||| Sbjct 123036 TTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805814017800