Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq830 113 7e-20 >seq830 Length=194395 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| | |||||||| || || || || ||||| Sbjct 123999 CCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAC 124058 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| ||| || |||||||| ||||| || ||||| | ||||||||| ||||| Sbjct 124059 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 124118 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 124119 ATTCCTTCCTTGTCTTG 124135 Score = 113 bits (124), Expect = 7e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||| ||||| | ||||||||| || || || || || || ||||| |||| ||| Sbjct 124242 AATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCT 124301 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| |||||||| ||||| | ||||||||| |||||||||||||| || ||| Sbjct 124302 TCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCT 124361 Query 146186 TG 146187 || Sbjct 124362 TG 124363 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | || ||||||||||| |||||||| || ||||| ||||| | Sbjct 123067 TTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAG 123126 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || |||| ||| || || ||||| || || || ||||| | ||||||||| |||| Sbjct 123127 ACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAG 123186 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| || ||||| Sbjct 123187 GAATACCTTCCTTGTCTTG 123205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 ||||||||||| | ||| ||||| || ||||| ||||| || ||||| |||| ||| Sbjct 123540 AATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTGCCATCT 123599 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || |||||||| || || || || || | ||||||||| || || |||||||| || ||| Sbjct 123600 TCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTCCTTGTCT 123659 Query 146186 TG 146187 || Sbjct 123660 TG 123661 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||| ||||| || | || ||||| || || || || || || |||||||||| ||| Sbjct 122627 TAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATC 122686 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 || ||||| || |||||||||||||| | |||||||| || ||||||||||| ||||| Sbjct 122687 TTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATC 122746 Query 146185 TTG 146187 || Sbjct 122747 CTG 122749 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| || ||||| |||| ||| || ||||||||||| || || || || | | Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || || |||||||| || ||||| ||| Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTA 123935 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || ||| ||||||| ||||| ||||| || || |||||||||| ||| || ||| Sbjct 123936 TCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGC 123995 Query 146276 AT 146277 || Sbjct 123996 AT 123997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 ||||| | ||| | ||||||||||| | || |||| |||| || || || || || || Sbjct 124455 CCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGA-ATGTTGTAGTCCGA 124513 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| |||| ||| || ||||| || ||||| || ||||| | ||| ||||| || || Sbjct 124514 CAGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGG 124573 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 124574 GATTCCTTCCTTGTCTTG 124591 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| || | |||||| | ||| || ||||| || || ||||||||||| | | Sbjct 122886 ATGTTATAATCCGACAAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGT 122945 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || |||||||| |||||||| ||||| Sbjct 122946 TGCTGGTCTGGAGGAATACCTTCTTTGTCTTG 122977 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||||||| | ||| ||||| || || || || || || ||||| |||| ||| Sbjct 123312 AAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCATCT 123371 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| || ||||||||||| | ||||||||| || || || ||||| || ||| Sbjct 123372 TCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTTGTCT 123431 Query 146186 TG 146187 || Sbjct 123432 TG 123433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743483182528000