Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq429 95.1 8e-15 seq830 84.2 1e-11 >seq429 Length=41586 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| ||||| ||| ||||| ||||||||||| ||||| ||| | || Sbjct 1125 AGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCC 1184 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| || || || ||||| || ||| | | ||||||||| Sbjct 1185 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCT 1244 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||||| | ||||| || | |||||||| Sbjct 1245 TGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTC 1304 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||| || || |||||||| Sbjct 1305 TTACCCGTCAAAGTTTTTACGAAAATCTGCAT 1336 >seq830 Length=194395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| ||||| | | | || ||||| |||||||| || || Sbjct 122648 TTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAA 122707 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GA 34315 ||| | |||||||| || || | | ||||| || || ||| |||||| | Sbjct 122708 AATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGAT-TTTGGCTTTAACGT 122766 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 || | || | ||| | || ||| || |||| ||||| || || || || | |||||| Sbjct 122767 TC-TCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTT 122825 Query 34376 ACAAAGATCTGCAT 34389 || ||||||||||| Sbjct 122826 ACGAAGATCTGCAT 122839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323053690904000