Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4450 170 2e-37 >seq4450 Length=177458 Score = 170 bits (188), Expect = 2e-37 Identities = 567/876 (65%), Gaps = 12/876 (1%) Strand=Plus/Plus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || ||||| | |||| | ||||| ||||| || ||||| || || | ||||| || ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 ||||||| || |||||| || | | || | | || | ||| || | Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAGATTTCAGCGATTCCCAAATCTGCCAGCAGC 24144 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | || || | ||| || || |||| | |||| | | |||||||| || || | | Sbjct 24145 TTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAGAT 24204 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 ||||| | | ||| | ||| || | ||| || ||| || || | || || || Sbjct 24205 ACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGTTC 24264 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 14215 | | | || | ||||| | | || ||||| || |||||||| || | Sbjct 24265 TTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAATTTG 24324 Query 14216 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAAT 14275 || || | | ||||| || || | ||||| || || || | || ||||||||| Sbjct 24325 CAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATCAAT 24384 Query 14276 CCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335 ||| || || | ||| || || | ||||| ||||| ||||| || ||||| ||| Sbjct 24385 CCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCCACT 24444 Query 14336 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14395 || ||||| || | | | ||| || || | |||| || | || ||||| ||| Sbjct 24445 GCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAATTTAAC 24504 Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA--AATAAATGTT 14453 ||||| |||| || ||||| | | || |||||||| |||||| || ||| || Sbjct 24505 GCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAAACTT 24564 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 ||||| || | | || || || || || | || || ||||| ||||||| Sbjct 24565 --TTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGTGTA 24622 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC 14571 |||| ||||| || ||||| | ||||| || || | || || | || |||||| || Sbjct 24623 TGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAAC--TTGTACTTC 24680 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 | ||||| || ||| |||||||| || ||||||||| || ||||||||||| Sbjct 24681 TTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATGC 24740 Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCATTG--CTGAGTTTTTTCCAATCGGCTAAA 14689 ||| | | || || || | || ||| | ||| | | ||||| |||||| | Sbjct 24741 CAACACATACTTGATGAAATGTTTCTCAT--TTGAAGTCATTTTTTCCCAATCTTTGTAG 24798 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATT 14749 ||||| || | ||| ||||||| ||| ||||||| || |||||| || |||||| Sbjct 24799 TCCTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATACATC 24858 Query 14750 ACCCATATTTCTTTATATAATATAGGAAAAACTACA 14785 ||| || || ||||| | || || || |||||| Sbjct 24859 TTCCACATGTCATTATAGACGATTGGGAACACTACA 24894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482317563662000