Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1383 129 1e-24 >seq1383 Length=53393 Score = 129 bits (142), Expect = 1e-24 Identities = 349/522 (67%), Gaps = 14/522 (3%) Strand=Plus/Plus Query 35180 ATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACC 35239 ||||| || | || ||| | | ||| | || ||| ||| ||||| | || || || Sbjct 31589 ATTTTCGGGGCGCAGATGCGCTACTCGTTGCGGGACAACATATTTCCATTGCTGACGACG 31648 Query 35240 AAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACA 35299 ||| | | ||||||| || || ||||| || || ||||||||||||||| | || Sbjct 31649 AAGCGAGTCTTCTGGAAGGGCGTCGTGGAGGAGCTGCTGTGGTTCATCAGGGGAAGCACG 31708 Query 35300 GACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAA 35359 |||| || |||||| | | |||||| ||||| ||| | || || | | |||| Sbjct 31709 AACGCTAAGGAATTGCAGGACAGGAAGATTCACATTTGGGATGCAAACAGCACCAGGGAT 31768 Query 35360 TTTTTGGA--CAGTAGAGGGTT--ATACGATAGAGCAGAGGGAGATTTGGGACCCGTATA 35415 || ||||| | || ||||| || ||| ||| || || || ||||| || | || Sbjct 31769 TTCTTGGATTCGGT--CGGGTTGAATTCGAGGGAG--GAAGGTGACTTGGGTCCAATTTA 31824 Query 35416 CGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTC-TTCCGATTATACTG 35474 |||||||||||| | |||| ||||| | || || | | | ||||||| || Sbjct 31825 TGGATTCCAATGGAGGCATTACGGTGCCAAGTACGA-AGGGATGCACGCCGATTACACCA 31883 Query 35475 GAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AATCCAGATGAT 35533 ||||||||||||||| || ||| | | |||| | | |||| | ||| | ||| Sbjct 31884 ACAAGGGTATTGATCAACTGCACAACGTGATCCAGACGATCA-AGAATAGACCAAACGAT 31942 Query 35534 AGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCA 35593 || ||||| || ||| || |||||||| || || ||| | |||||| | || || Sbjct 31943 AGGAGGATCATAATGTGCGCTTGGAATCCAATCGACATTCCGCAGATGGCTTTACCGCCT 32002 Query 35594 TGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCA 35652 || || || || | |||||||| || ||||| ||||| ||| |||| | | || || Sbjct 32003 TGTCA-TTGTCTCGTCCAATTTTACGTTGCTAACGGAGAGTTGAGCTGCCTGCTTTACCA 32061 Query 35653 GCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || ||| | || | || || || ||||| || || Sbjct 32062 GAGATCCGCGGATATGGGACTCGGAGTTCCGTTCAACATCGC 32103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989525042440750