Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1383 132 4e-26 >seq1383 Length=53393 Score = 132 bits (146), Expect = 4e-26 Identities = 349/527 (66%), Gaps = 18/527 (3%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || |||| ||| || |||| || || || | ||||| ||||||||||| ||||| Sbjct 32148 AGCCCGGTGATGTGTGCCATCATGTAGGTAAGTAAAGCGTAACTGGCGATGTTGAACGGA 32089 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || ||||| ||||| || ||||| |||||||| ||| ||||| || ||| || ||| Sbjct 32088 ACTCCGAGTCCCATATCCGCGGATCTCTGGTAAAGCAGGCAGCTCAACTCTCCGTTAGCA 32029 Query 21111 ACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGG 21169 |||||||| || || | || |||||||| || | ||||||| ||| | ||| || Sbjct 32028 ACGTAAAATTG-GACGAGACAATGACAAGGCGGTAAAGCCATCTGCGGAATGTCGATTGG 31970 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCAC 21229 ||||| |||||||| | ||| | || ||||| || | | || || | | ||| Sbjct 31969 ATTCCAAGCGCACATTATGATCCTCCTATCGTTTGGTCTATTCTTGATCGTCTGGATCAC 31910 Query 21230 GTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT--GTACTCC 21287 || |||| || || | |||| ||| | ||||| || |||| ||||| Sbjct 31909 GTTGTGCAGTTGATCAATACCCTTGTTGGTGTAATCGGCGT--GCATCCCTTCGTACTTG 31852 Query 21288 GCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCC 21347 || || |||| ||||| ||||| || || | || |||| || || || ||| Sbjct 31851 GCACCGTAATGCCTCCATTGGAATCCATAAATTGGACCCAAGTCACCTTC------CTCC 31798 Query 21348 C-CG-----AAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 | || || || || |||| || | | || | || || |||||||| | Sbjct 31797 CTCGAATTCAACCCGACCGAATCCAAGAAATCCCTGGTGCTGTTTGCATCCCAAATGTGA 31738 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 | | | | || ||| | | || ||| |||||||| |||||||||| |||| Sbjct 31737 ATCTTCCTGTCCTGCAATTCCTTAGCGTTCGTGCTTCCCCTGATGAACCACAGCAGCTCC 31678 Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAA 21508 |||||||||||| |||| || || | || || || | || ||||| Sbjct 31677 TCCACGACGCCCTTCCAGAAGACTCGCTTCGTCGTCAGCAATGGAAA 31631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427751757132000