Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4450 172 5e-38 >seq4450 Length=177458 Score = 172 bits (190), Expect = 5e-38 Identities = 565/874 (65%), Gaps = 8/874 (1%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || ||||| | |||| | ||||| ||||| || ||||| || || | ||||| || ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||||| || |||||| || | | || | | || | ||| || | Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAGATTTCAGCGATTCCCAAATCTGCCAGCAGC 24144 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||||| | || || || |||| | |||| | | |||||||| || || | | Sbjct 24145 TTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAGAT 24204 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | ||| | ||| || | ||| || ||| || ||| | || || | Sbjct 24205 ACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGTTC 24264 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 13883 | | |||| | ||||| | | || ||||| || |||||||| || | Sbjct 24265 TTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAATTTG 24324 Query 13884 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAAT 13943 || || | | ||||| || || | ||||| || || || | || ||||||||| Sbjct 24325 CAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATCAAT 24384 Query 13944 CCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACT 14003 ||| || || | ||| || || | || || ||||| ||||| || ||||| ||| Sbjct 24385 CCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCCACT 24444 Query 14004 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14063 || ||||| || | | | ||| || || | |||| || | || ||||| ||| Sbjct 24445 GCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAATTTAAC 24504 Query 14064 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA--AATAAATATT 14121 ||||| |||| || ||||| | | || |||||||| |||||| || ||| || Sbjct 24505 GCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAAACTT 24564 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 ||||| || | | || || || || || | || || ||||| ||||||| Sbjct 24565 --TTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGTGTA 24622 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||| ||||| || ||||| | ||||| ||| || | || || ||||||||| Sbjct 24623 TGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTACTTCTT 24682 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 ||||| || ||| |||||||| || ||||||||| || ||||||||||||| Sbjct 24683 TACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATGCCA 24742 Query 14302 ATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGAGTTTTTTCCAATCGGATAAATC 14359 | | | || || || | || ||| | ||| | | ||||| |||||| | || Sbjct 24743 ACACATACTTGATGAAATGTTTCTCAT--TTGAAGTCATTTTTTCCCAATCTTTGTAGTC 24800 Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTAC 14419 ||| || | ||| ||||||| ||| ||||||| || |||||| || |||||| Sbjct 24801 CTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATACATCTT 24860 Query 14420 CCATATTTCTTTATATAATATAGGAAAAACTACA 14453 ||| || || ||||| | || || || |||||| Sbjct 24861 CCACATGTCATTATAGACGATTGGGAACACTACA 24894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479700115810000