Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4450 174 2e-38 >seq4450 Length=177458 Score = 174 bits (192), Expect = 2e-38 Identities = 404/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 13645 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13704 || ||||| || |||||||| || | || || | | ||||| || || | ||| Sbjct 24298 TGCTTAAACATCAAACACGCGAATTTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCG 24357 Query 13705 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 13764 || || || || | || |||||||||||| || || | ||| || || | ||||| Sbjct 24358 TTGGAGAAAGTGAGACCGGGCATCAATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAA 24417 Query 13765 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 ||||| ||||| || ||||| ||||| ||||| || | | | ||| || || | Sbjct 24418 CTGCCGGAGAAGAAAATACCCTCCACTGCTGCAAAAGCGACGACCCTTTCACCGAATGTC 24477 Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 |||| || | || ||||| ||| ||||| |||| || ||||| | | || Sbjct 24478 GCTTCTTGACTGGAAATCCAATTTAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATA 24537 Query 13885 GTTTCGATTGCATT--GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 13942 ||||| |||||||| ||| ||| || ||||| || | | || || || || | Sbjct 24538 GTTTCAATTGCATTAAGAAGAAAACTT--TTCTCCTTCACATCTTTGATATAAGTGTCTA 24595 Query 13943 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAAC 14002 | | || || ||||| ||||||||||| || || || ||||| | ||||| || Sbjct 24596 TCAACAAACTGTACATCAGTGAGTGTATGTTCTCCATGGCAATCTGCATGCCATAGAAGA 24655 Query 14003 ATCTAGCTTC--TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 || | || || | || |||||| || ||||| ||| ||| ||||||||| || Sbjct 24656 ATTTTGCCTCAATAAC--TTGTACTTCTTTACTGAATCTCTCTACCAGGTTTTCATTGAC 24713 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 |||||||||| || |||||||||||||| | | || || || | || ||| | || Sbjct 24714 AATACCATCAGAGGCAGCAAAAAATGCCAACACATACTTGATGAAATGTTTCTCAT--TT 24771 Query 14121 G--TTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 | | | ||||| |||||| | ||||| || | ||| ||||||| ||| ||||| Sbjct 24772 GAAGTCATTTTTTCCCAATCTTTGTAGTCCTTCGACAAATCAACTTCATGAACCTTCCAA 24831 Query 14179 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14238 || || |||||| || |||||| ||| || || ||||| | || || || ||| Sbjct 24832 AATGAGGCCTCAGCTTGTTCATACATCTTCCACATGTCATTATAGACGATTGGGAACACT 24891 Query 14239 ACA 14241 ||| Sbjct 24892 ACA 24894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478560982026000