Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq830 107 1e-18 >seq830 Length=194395 Score = 107 bits (118), Expect = 1e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | |||||| | ||||| ||| |||||| || | || ||||| ||| Sbjct 122841 CCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGAC 122900 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||||||||| || || || || | || Sbjct 122901 AAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGA 122960 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||||||| || ||| | | |||| || | ||| |||||| | ||| | Sbjct 122961 ATACCTTCTTTGTC-TTGAATTTTAGCCTTT-ACGTTCTCAATTGTGTCCGATGGCTCCA 123018 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || | || ||||| ||||| || | ||||||||| ||||| |||||| Sbjct 123019 CCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCATT 123068 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||||||||| |||| ||||| || | ||||| || ||| Sbjct 123297 CCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 123356 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || ||||| ||||| |||||||||||||| || || ||||| | || Sbjct 123357 AGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGG 123416 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| | ||| ||||| || ||| || Sbjct 123417 ATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACC 123476 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || |||| |||||||||||||| ||||| Sbjct 123477 TCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||||||||| |||| ||||| || | ||||||||| ||| Sbjct 123525 CCTCCACGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGAC 123584 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || ||||||||||| ||||| || || || || || ||||| | || Sbjct 123585 AGAGTCCTGCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGG 123644 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| | ||| ||| ||| | || || Sbjct 123645 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACT 123704 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || | ||||| || || || ||||| Sbjct 123705 TCCAAAGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 123751 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || |||||||| | || |||||||| | ||||||||| ||||| || | | || Sbjct 123084 AAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCATCC 123143 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 ||||| ||||| || || || ||||| || || ||||| | || | |||||| || || Sbjct 123144 TCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCT 123203 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 || | || || | ||| ||| ||| | || || |||| || || ||| Sbjct 123204 TGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGGTT 123263 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || | ||||| |||||||||||||| Sbjct 123264 TTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381347987069700