Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq830 145 8e-30 seq4241 116 4e-21 seq1314 84.2 2e-11 >seq830 Length=194395 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| |||||||| | |||||||| || || |||||||| ||| | Sbjct 124227 CCTCCACGAAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 124286 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| |||||||||||| ||||| Sbjct 124287 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 124346 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| |||| | ||| | ||||| | ||||| ||| Sbjct 124347 ATTCCTTCCTTGTCTTGGATTTTGGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACT 124406 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || || ||||| ||||| ||||| || |||||| Sbjct 124407 TCCAAGGTAATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 124454 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||||| |||||||| ||||| |||||||| || | Sbjct 123999 CCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAC 124058 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| |||||| |||||||||||| ||||| Sbjct 124059 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGG 124118 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | ||| | ||||| | ||||| ||| Sbjct 124119 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACT 124178 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || ||||||||||| ||||| || |||||| || Sbjct 124179 TCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCATACCT 124229 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||||||| ||||| | ||||||||| ||||| || |||||||| | Sbjct 123069 CCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGAC 123128 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || | |||||||| || |||||| |||||||||||| ||||| Sbjct 123129 AAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGA 123188 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || || | ||||| ||| Sbjct 123189 ATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACT 123248 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || || ||||| |||||||| || ||||||||| || Sbjct 123249 TCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCATACCT 123299 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| |||||||||| ||||||||| ||||| |||||||| || | Sbjct 124683 CCTCCACGAAGACGCAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGAC 124742 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| |||||| |||||||||||| || || Sbjct 124743 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGG 124802 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | ||| | || || | ||| || || Sbjct 124803 ATTCCCTCTTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACC 124862 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || ||||| || || || ||||| Sbjct 124863 TCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || ||||| || ||||| ||||| || |||| || ||||| || || |||||||| || Sbjct 122610 TGTCCTCCACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 122669 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || || ||||| | ||| || |||||| | |||| ||| |||||||| || Sbjct 122670 GACAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGT 122729 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| || || ||||| ||| | | || | || || | ||||| Sbjct 122730 GGAATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCC 122789 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||| | ||||| || ||||| ||||||||||| || |||||| Sbjct 122790 ACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 122840 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || ||||| | || ||||| || || || |||||||| | Sbjct 123525 CCTCCACGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGAC 123584 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||| || |||| | |||||||||||| || || Sbjct 123585 AGAGTCCTGCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGG 123644 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | ||| | || || | ||||| ||| Sbjct 123645 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACT 123704 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || ||||| ||||| ||||| || |||||| || Sbjct 123705 TCCAAAGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCATACCT 123755 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| || |||| ||| | || || || || || ||||| ||||| | Sbjct 122841 CCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGAC 122900 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || | ||| ||||| ||| | |||| ||||||||| || ||||| Sbjct 122901 AAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGA 122960 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| |||| | || | ||||||| || || || Sbjct 122961 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACC 123020 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || ||||| ||||| ||||| || ||||| Sbjct 123021 TCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||||||| ||||| | || ||||| || || |||||||| || | Sbjct 123297 CCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 123356 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||| ||| | |||| |||||||||||| || || Sbjct 123357 AGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGG 123416 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | ||| | ||||| | || || || Sbjct 123417 ATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACC 123476 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || || || || || ||||| || || || |||||| || Sbjct 123477 TCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCATACCT 123527 >seq4241 Length=192509 Score = 116 bits (128), Expect = 4e-21 Identities = 251/366 (69%), Gaps = 17/366 (5%) Strand=Plus/Plus Query 156842 TCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATG 156901 ||||| || |||| || | || || | ||| |||||||||||||| || || || || Sbjct 52331 TCGCTTTCGAACGGAATCCTCATCAAGATAAAAGCATCGGCCAAACCCTGTATACCGATA 52390 Query 156902 CCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTG 156958 || || |||||||| | |||||| || ||| | || |||| | ||| ||| | ||| Sbjct 52391 CCAATTGGACGATGTCTCATATTTGAGTTTCTAGC---TTCAGGCACAGGATAGTAGTTG 52447 Query 156959 CGATCAATAATTTTATTCAAACTATCCACTACAT-GTTTGACCACAGTGTGCAATAGTTG 157017 || || || || |||| | | || | || | ||||| | | || | ||| Sbjct 52448 ATGTCGATGATCTTGTTCAGATT-TCTAGTAACTAGTTTGGTGAGTTCCTTCAGT--TTG 52504 Query 157018 A--AAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTA 157072 | ||||| || | |||| || | | | | || |||||||| ||||||| |||| Sbjct 52505 ATGAAATCGAATGATTTATCTGGTTTTACAAACATGTTAACGGCAATTGACGCTAAATTA 52564 Query 157073 CATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCAT 157132 || |||||||||||||||||||| |||| |||||||| | |||| || || | Sbjct 52565 CAGACGGCAGTTTCGTCGGGCGCAGTGTATTCCACTATTTCTGTGCACAGGTTCGAGCTT 52624 Query 157133 TTTATCAATCCGCAATTACT-TTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 157191 || || ||| ||| | || ||| ||||| || |||||| || |||||||| | ||| Sbjct 52625 TTGAT-TGTCCCCAAATTCTGTTGGTTGCTCTTCGAGTTGCAGGCATCCTTGTACATCAT 52683 Query 157192 GTACGG 157197 ||| || Sbjct 52684 GTAAGG 52689 >seq1314 Length=49468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || || | || || || || || |||||||| ||| Sbjct 22008 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 22067 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || ||||| || ||||| || |||||| |||||||||||| || || Sbjct 22068 AGGGTGCGTCCA-TCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGG 22126 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| || || || | | ||| | || || | ||| || || Sbjct 22127 GATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGAC 22186 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 22187 CTCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506984929788000