Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1383 132 7e-26 seq4586 123 4e-23 seq4241 93.3 6e-14 >seq1383 Length=53393 Score = 132 bits (146), Expect = 7e-26 Identities = 368/554 (66%), Gaps = 14/554 (3%) Strand=Plus/Plus Query 69869 CGGTACTCGTTGAGGGACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAG 69928 || ||||||||| ||||||||| | || || ||||||| ||| ||||| ||| Sbjct 31607 CGCTACTCGTTGCGGGACAACATATTTCCATTGCTGACGACGAAGCGAGTCTTCTGGAAG 31666 Query 69929 GGCGTCATCGAGGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTG-AG 69987 |||||| | |||||||| ||||| | || ||| || || || || || || || Sbjct 31667 GGCGTCGTGGAGGAGCTGCTGTGGTTCATCAGGGGAAGCACGAACGCTAAGGAATTGCAG 31726 Query 69988 CCGAAAGGGTG-TACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTT--TGGATTCGCT 70044 || ||| | | ||||||||| | ||||| | | | | ||| |||||||| | Sbjct 31727 --GACAGGAAGATTCACATTTGGGATGCAAACAGCA--CCAGGGATTTCTTGGATTCGGT 31782 Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 ||| || | || | || || || |||| ||| | || |||||||| |||||||| Sbjct 31783 CGGGTTGAATTCGAGGGAGGAAGGTGACTTGGGTCCAATTTATGGATTCCAATGGAGGCA 31842 Query 70105 CTCGGGCACCAAGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAAT 70163 | || ||||||| | || ||| | | || || | ||||| |||||||| Sbjct 31843 TTACGGTGCCAAGTACGAAGGGATGCACGCC-GATTACACCAACAAGGGTATTGATCAAC 31901 Query 70164 TGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCT 70223 |||| | | || | || |||||| | |||| |||||||||||| |||||||| Sbjct 31902 TGCACAACGTGATCCAGACGATCAAGAATAGACCAAACGATAGGAGGATCATAATGTGCG 31961 Query 70224 CATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGT 70283 | |||||||| || | | || ||||| |||| || ||||| ||| | | || | Sbjct 31962 CTTGGAATCCAATCGACATTCCGCAGATGGCTTTACCGCCTTGTCATTGTCTCGTCCAAT 32021 Query 70284 TTTAC--TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGG 70341 ||||| | || | || | ||| ||| | | || ||||| || || ||||| Sbjct 32022 TTTACGTTGCTA--ACGGAGAGTTGAGCTGCCTGCTTTACCAGAGATCCGCGGATATGGG 32079 Query 70342 CCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACAT 70401 ||||| || || || ||||| || || || || | | || ||||||| || ||||| Sbjct 32080 ACTCGGAGTTCCGTTCAACATCGCCAGTTACGCTTTACTTACCTACATGATGGCACACAT 32139 Query 70402 TACCGGCCTGAAAG 70415 ||||| || |||| Sbjct 32140 CACCGGGCTTAAAG 32153 >seq4586 Length=8236 Score = 123 bits (136), Expect = 4e-23 Identities = 604/958 (63%), Gaps = 70/958 (7%) Strand=Plus/Plus Query 126664 GCCAATTTCAGAGCACGATCAATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACA 126723 |||| ||||||| | | || ||| |||| || | | || ||||| ||| || Sbjct 5563 GCCAGTTTCAGACCTCTGTCGATGAAGTCGACCACCTGGTCGATGTCCTTCTCGAGGAAG 5622 Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783 || || ||||||| ||| ||||| || ||||||| ||| ||| | | || |||||| Sbjct 5623 CCGCGAGTCGTCAACGCCGGAGTGCCCAGTCTGAAACCGGATGGGTTCATGGCACTCTTG 5682 Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843 |||||||| || ||||| |||||||| ||||| || | ||||||||| ||| ||| Sbjct 5683 TCTCCGGGCACGGTGTTCTTGTTGCAGGCGATGTTGATCTCCTCGAGGATGTACTCGGCC 5742 Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903 | || | || || | ||||| ||| || || | || || || ||||| ||| Sbjct 5743 CTGGAGCCGGGCAGACCGAAGTCGCGCAGATCGACGAGCAACATGTGGACGTCGGTGCCG 5802 Query 126904 CCAGTGGTGACGGTGTAGCC--TCG--TGAAACGAGTCCCTCTGCCA-ACAACTGTGCAT 126958 || |||| || | |||| || ||| |||| | || | || | || || | | Sbjct 5803 CCGGTGGAGATGTTGTATCCCTTCGATTGAA----GACCGGCGGCGAGACGACGGG--AA 5856 Query 126959 TTCGCACCACTCGTCTT-TGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCG 127017 |||||| | | ||| ||||| | || || |||| ||||||| | | || Sbjct 5857 TTCGCAACGACCTGCTTCTGGTACTCGACGAATTCCGGAGTCTTGGCCTGCTTGAAAGCC 5916 Query 127018 GTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCT 127077 || || || || || ||||||| || || || || ||||| || || || ||||| ||| Sbjct 5917 GTCGCCATGGCAGCGATCGTGTTGTTATGGGGACCGCCTTGGAGACCGGGGAACACCGCT 5976 Query 127078 CGTTCAATTTCCTGCTCTAG--------TGA-----------TTTGCGGTAA-------- 127110 | | || | ||| || ||| || ||| | | Sbjct 5977 TGGTTGATGCGCGACTCCAGATCGTACATGACCTTATCGCCCTTGGCGTTCACGGATCTG 6036 Query 127111 ---------------AAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTA 127155 |||||||| ||||| | ||||| | | ||||||||||||| Sbjct 6037 AGACCCTTCCTGAAGAAGATGACGCCGGCCCTGGGACCGCGCAAGCTCTTGTGCGTTGTC 6096 Query 127156 GTGGTCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCC 127215 ||| | || | ||| | ||||| || || ||| |||| | | || | | || || Sbjct 6097 GTGCTGACGACGTCGCTGTACTCGAACGGAGATGGAGTGACGCCGGCGGCGA-CGAGACC 6155 Query 127216 GCA-ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAA 127274 | | ||||| || || |||| | || | | |||| | || || ||||| ||||| Sbjct 6156 GGAGATGTGCGCCATGTCGGAGAAGAGGTAAGCGCCGACGTTGTCCGCGATCTCGCGGAA 6215 Query 127275 TCGTCTA-TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTT 127333 | ||| ||||| | | |||| || || ||| ||||| | ||| | | || | Sbjct 6216 -CTTCTTGTAGTCGAGGGCGCGAGAGTAACAGCTGACTCCGGCGACGATGACTTTGGGCT 6274 Query 127334 TGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCA 127393 |||| || ||| || ||| || | || |||| || || | || || |||| Sbjct 6275 TGAAGAGGACGGCGGACTTGGCGAGCGCCTCGTAATCGATCAGACCGGACTTGGGGTCCA 6334 Query 127394 CCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CGTTG-CG--- 127442 ||||||| ||||| ||||| |||| || || || || | ||| | || Sbjct 6335 CCTTGTAGGGCATCGACTCGAAGAAGATGGAAGTCGCTGAGATCCTCTTCGTCGGCGTCA 6394 Query 127443 -GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 ||| ||||| || || || || ||||| || || || | |||||||| | |||||||| Sbjct 6395 TGAAGCCGTGGGTGAGATGACCACCGTCCGGAAGGTCCAAACCCATGATGCGACCGTGCG 6454 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 ||| | | || ||||| ||||| || |||||| || || ||||||||||| || Sbjct 6455 GTTCGATCAGACCGGTGTAGACGGCGAAATTGGCCGGAGATCCGGAGTACGGTTGCAC 6512 >seq4241 Length=192509 Score = 93.3 bits (102), Expect = 6e-14 Identities = 295/447 (66%), Gaps = 14/447 (3%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963 || || || ||||| |||||||| || ||| || | || || | || || | ||| | Sbjct 53004 GCGGTGTATTTGGAGCCTTGGCATGCTGACATTATGGAATTCGT-GA-ATCTGAAAAGGA 52947 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 | | || |||||||| | |||||||||| ||||||||||| | ||| | || || | Sbjct 52946 ATACGGGAAATGAAGAGGAAAGAGCCAGGGATTTGTTTTATGCCTTGTGGATACCGGACT 52887 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 |||| ||||| ||||| | | | | | |||| || |||||||| | || | Sbjct 52886 TGTTTATGAAACGCGTAGAGGCTGATAGTGTCTGGTCACTGATGTGCCCTCATAAGTGTC 52827 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGC 97140 | || |||| || ||||||||||||||||| || ||| || ||||| Sbjct 52826 CTGGATTGTCGGACTGCTGGGGCGAAGAGTTCGA---AAAGCTCTATGAAAAATACGAAG 52770 Query 97141 AAGAGGGCCGATACGTGAGAC-GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACG 97199 || || ||| | || || || || ||||| | ||| || || || | Sbjct 52769 CCGAAGGAAAATATAACAAACAGATTC-CGGCTAGAGAAGTTTGGCGCGCAATTGTTATC 52711 Query 97200 GCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACC-GTGAATCGCAACAG 97258 | || | ||| ||| ||| ||||| | ||||||||| || | | ||| || || Sbjct 52710 TCGCAAATTGAGGTTGGTGTTCCTTACATGATGTACAAGGATGCCTGCAACTCG-AAGAG 52652 Query 97259 CAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||||||| | ||||| || ||||| |||| || |||||||| ||||| || || || Sbjct 52651 CAACCAACAGAATTTGGGGACAATCAAAAGCTCGAACCTGTGCACAGAAATAGTGGAATA 52592 Query 97319 CGCCTCTCCGGACGAGACGGCAGTTTG 97345 | | | || ||||| || || || || Sbjct 52591 CACTGCGCCCGACGAAACTGCCGTCTG 52565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741016125934000