Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq830 141 7e-29 seq1314 89.7 4e-13 >seq830 Length=194395 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||||||||| || ||||| |||||||| || ||| | || | ||| Sbjct 124470 AATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGACAGAGTCCTGCCATCT 124529 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| || |||||| | |||||||||||||| || ||| |||||||| ||||| Sbjct 124530 TCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 124589 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| || ||| |||| || || || ||| || || |||||||||||| Sbjct 124590 TGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATGGTT 124649 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| ||||| || |||||| Sbjct 124650 TTTCCAGTCAAGGTTTTAACAAAGATCTGCATA 124682 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||||||||| || || || ||||| |||||||| || ||| | || | ||| Sbjct 124698 AATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTCCTGCCATCT 124757 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | ||||||||||| || || ||| ||||| |||||||| Sbjct 124758 TCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCCTCTTTGTCT 124817 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| ||| |||| |||||||| || || || || || |||||| Sbjct 124818 TGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAAGTGATGGTT 124877 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT------ATTTGAAAATAAAA 15377 ||||| || | ||||| ||||| || ||||| ||||||| | |||| Sbjct 124878 TTACCAGTTAAGGTTTTCACAAAGATCTGCATCCTGCAATTTGAAGAAAAAA 124929 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||| | || || || ||||| || |||||||| | | || | || Sbjct 123084 AAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCATCC 123143 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||| || ||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 123144 TCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCT 123203 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||| ||| || | || || |||||| ||| || |||||||| |||||| Sbjct 123204 TGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGGTT 123263 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||||||||||||||||||| Sbjct 123264 TTTCCAGTCAAGGTTTTTACAAAAATTTGCATA 123296 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||||||||| || || ||||| |||||||| || ||| | || | ||| Sbjct 124014 AATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGACAGAGTCCTGCCATCT 124073 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| |||||| | ||||||||||| || || || |||||||| ||||| Sbjct 124074 TCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTCCTTGTCT 124133 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || |||| || || || ||| || || || ||||||||| Sbjct 124134 TGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAAGTAATGGTT 124193 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || || || |||||| Sbjct 124194 TTTCCAGTCAATGTTTTAACGAAGATCTGCATA 124226 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| || || || || || || |||||||| ||| ||| | || | ||| Sbjct 124242 AATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCT 124301 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | ||||||||||| || || ||||||||||| ||||| Sbjct 124302 TCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCT 124361 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| |||||| |||| || || || ||| || || |||||||| ||| Sbjct 124362 TGGATTTTGGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAAGGTAATAGTT 124421 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| || || || |||||| Sbjct 124422 TTTCCAGTCAAGGTTTTAACGAAGATCTGCATA 124454 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | ||| | |||||| || |||||||| || || || || |||||||| || Sbjct 122613 CCTCCACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAC 122672 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| ||||| |||||||| | |||||||| || || || |||| Sbjct 122673 AGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGA 122732 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| || || | || || ||||| ||| || Sbjct 122733 ATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACC 122792 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || |||| ||||||||| || || |||||| Sbjct 122793 TCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATA 122840 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | ||| |||| ||| |||||||| || || || ||||| ||||| Sbjct 122841 CCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGAC 122900 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | || || ||||| || || || | ||||||||||| ||||| ||| Sbjct 122901 AAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGA 122960 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTAC 15315 || ||||||||||| |||||| |||||| | || || || || | || || || Sbjct 122961 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTC-CGATGGCTCCAC 123019 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||| |||||| || ||||| ||||| Sbjct 123020 CTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||| || ||||| || || || |||||||| || ||| | || | ||| Sbjct 123312 AAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTCCTGCCATCT 123371 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||| || || | ||||||||||| || || || || ||||| ||||| Sbjct 123372 TCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTCCTTGTCT 123431 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| || ||| ||| |||| || || || | || || || || || |||||| Sbjct 123432 TGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAAGTGATGGTT 123491 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || | ||||| |||||||| |||||| Sbjct 123492 TTACCAGTTAAGGTTTTCACAAAAATCTGCATA 123524 >seq1314 Length=49468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || || || |||||||| ||| || | | | || Sbjct 22023 AACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCC 22082 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || ||| | ||||||||||| || || || ||||| |||||||| Sbjct 22083 TCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTGTCC 22142 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| || |||||| || || || | ||| ||||| Sbjct 22143 TGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTGATGGTC 22202 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || ||||||||||| Sbjct 22203 TTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362158674625650