Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq830 98.7 8e-16 seq1636 82.4 6e-11 >seq830 Length=194395 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | | || |||| || || ||||| |||||||| ||||||||||| | Sbjct 123067 TTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCAG 123126 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || || || | ||||||| ||||||||| || | || | | |||||||| | Sbjct 123127 ACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGAG 123186 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| |||||| || || | | | |||||| || || Sbjct 123187 GAATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCAA 123246 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || || ||||| |||||||||||||| Sbjct 123247 CTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 >seq1636 Length=121147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 ||||||||||| || |||||||| || | ||| | |||| ||||||||| | | | Sbjct 2983 ACGTTGCCCAGGTCACCGACGTGACGTACGTCGGAGGTGGGACCGCCGTGATCCTTGCCC 3042 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 || || ||||| ||||| || |||| |||||| || |||| ||||||||||| Sbjct 3043 TGCGGATTGAAGTGGGGCCCGGCCGAGATGCAACCGTTGGTGTTGTCACCGAACTCGTGG 3102 Query 21259 ACGTGAAAGCCGTGCAGTCC 21278 | ||| || ||||| || || Sbjct 3103 ATGTGGAATCCGTGGAGGCC 3122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549305382100