Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq830 102 5e-17 seq1314 84.2 1e-11 >seq830 Length=194395 Score = 102 bits (112), Expect = 5e-17 Identities = 168/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || ||||||| | ||||| |||||||| ||||| || || ||||| ||||| Sbjct 123059 AATCTGCATTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATT 123118 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||||||||| | || ||||| || || || || || ||||||||||| Sbjct 123119 GTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTG 123178 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC 33309 || | || || ||||| || || || | ||| || || | | ||| || || Sbjct 123179 ATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCC---TTAACGTTCTCAATTGTATC 123235 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||| ||| || | || || |||||||| || | |||||||| ||||||||||| Sbjct 123236 GGATGGTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 102 bits (112), Expect = 5e-17 Identities = 158/222 (71%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 ||||| |||||||| | || || || || || |||||||||||||||| |||| | Sbjct 123537 CGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACA----GAGTCCT 123592 Query 33213 G--GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || |||||||| || || || |||||||||||||| || | ||| || ||||| Sbjct 123593 GCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCTTC 123652 Query 33271 TTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || | | | ||| || || ||| ||| || ||| |||| ||| |||| Sbjct 123653 CTTGTCTTGGATTTTAGCC---TTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAA 123709 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || |||||||| || | ||||| ||||| || ||||| Sbjct 123710 AGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 123751 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || ||||| | ||| | || ||||| || || || || ||||| |||||| | Sbjct 122853 CGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGACAAAGTTCTACCA 122912 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| || ||| || |||||||||||||| | || || |||||||| Sbjct 122913 TCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTG 122972 Query 33275 TCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || || | ||| ||||| | | ||| ||||| || | || |||| ||| Sbjct 122973 TCTTGAATTTTAGCC---TTTACGTTCTCAATTGTGTCCGATGGCTCCACCTCCAAAGTG 123029 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| | |||||| |||||||| ||||| Sbjct 123030 ATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 ||||| |||||||| | || || || ||||| || ||||| || |||| |||| | Sbjct 124011 CGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGACA----GAGTCCT 124066 Query 33213 GG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || |||||||| || ||| || || ||||||||||| || | || || ||||| Sbjct 124067 GCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGGGATTCCTTC 124126 Query 33271 TTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || | | | ||| || || ||| ||| ||||| |||| ||| |||| Sbjct 124127 CTTGTCTTGGATTTTGGCC---TTGACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAA 124183 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || |||||||| || | ||||| ||||| || ||||| Sbjct 124184 AGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 ||||| |||||||| | || || || || || || ||||| ||||||| |||| | Sbjct 123309 CGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACA----GAGTCCT 123364 Query 33213 GG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || ||||| || || || ||| || ||||||||||| || | ||| || ||||| Sbjct 123365 GCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCTTC 123424 Query 33271 TTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || |||| ||| || || ||| ||| ||||| || | ||| |||| Sbjct 123425 CTTGTCTTGAATCTTAGCC---TTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAA 123481 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || | ||||| || ||||| ||||| Sbjct 123482 AGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--T 33212 ||||| || ||||| | || || || || || || ||||| || |||| |||| | Sbjct 124239 CGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACA----GAGTCCT 124294 Query 33213 GG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | || |||||||| || ||| ||| || ||||||||||| || | || || ||||| Sbjct 124295 GCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCTTC 124354 Query 33271 TTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 || || | | | ||| ||||| ||| ||| ||||| |||| ||| |||| Sbjct 124355 CTTGTCTTGGATTTTGGCC---TTTACGTTTTCAATTGTGTCAGATGGTTCAACTTCCAA 124411 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || |||||||| || | ||||| ||||| || ||||| Sbjct 124412 GGTAATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 124453 >seq1314 Length=49468 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || || ||||| || || | || || Sbjct 22020 CGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCA 22079 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| || || || ||||||||||| || | ||| || || ||||| Sbjct 22080 TCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTG 22139 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || || ||| ||| | || || || || Sbjct 22140 TCCTGGATCTTGGCC---TTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTG 22196 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || ||||| |||||||||||||| Sbjct 22197 ATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318759534275700