Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4450 239 4e-58 >seq4450 Length=177458 Score = 239 bits (264), Expect = 4e-58 Identities = 583/876 (67%), Gaps = 8/876 (1%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 || ||||| | |||| | ||||| || || || |||||||| |||| ||| || || ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAACAA 12981 ||||||| ||| |||||| ||| ||| |||| | || || ||| | || Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAG-ATTTCAGCGATTCCCAAATCTGCCAGCAG 24143 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||| || || || ||||| | ||| | | || ||||| || || || Sbjct 24144 CTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAGA 24203 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 |||||||| ||||| || | ||| | | ||| || | || || || | | |||| Sbjct 24204 TACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGT- 24262 Query 13102 TCTTATTACGTTCTCTAATGGAGGATT-TGATAGA--TGCTTAAACATCATACATGCAAA 13158 |||| || |||| || ||| || || || ||||||||||||| ||| || || Sbjct 24263 TCTTG--ACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAA 24320 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 | ||||||| ||||||| || || | |||||| || || || ||||| ||||| Sbjct 24321 TTTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCAT 24380 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | ||| || || | ||| || || | || || || || || || || || || Sbjct 24381 CAATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTC 24440 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTT 13338 ||||||||||| || | | ||||||||| | || | || ||| ||||| || Sbjct 24441 CACTGCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAATT 24500 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 | ||||| | || || | ||| ||||| ||| |||| ||||| |||| | | | Sbjct 24501 TAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAA 24560 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 | |||| ||||| ||| |||||||| |||||||| || || ||||| ||| || Sbjct 24561 ACTTTTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGTG 24620 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || || ||||| || || || | ||||| || || | ||||| || || ||||| Sbjct 24621 TATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTACTTC 24680 Query 13519 GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578 ||||| ||| | | |||||| || || || || ||| ||||||||||| || Sbjct 24681 TTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATGC 24740 Query 13579 AAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638 | | | ||| || || | ||| || ||| | || ||| ||||||| | || Sbjct 24741 CAACACATACTTGATGAAATGTTTCTCATTTGAAGTCATTTTTTCCCAATCTTTGTAGTC 24800 Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCAT 13698 || || ||||| || || | ||| ||||||| || || |||| | | ||||||| | Sbjct 24801 CTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATACATCTT 24860 Query 13699 CCATATATCCTTATAAACAATGGGAAACACAACGTA 13734 ||| || || ||||| || || || ||||| || || Sbjct 24861 CCACATGTCATTATAGACGATTGGGAACACTACATA 24896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430957975419300