Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq830 149 1e-30 seq429 132 1e-25 >seq830 Length=194395 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| |||||||| || ||||| | ||| || ||| Sbjct 122643 GTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTGCCA 122702 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||| ||||| || || |||||||| |||||||| || || ||||| Sbjct 122703 GCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCTTTA 122762 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| ||||| ||||| | || |||||||| || || | ||| Sbjct 122763 ACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTT 122822 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 122823 TTTACGAAGATCTGCAT 122839 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | | || | ||||||||||||||| || || ||||| || ||| Sbjct 123066 ATTCCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAATCA 123125 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || || || || || | ||||| || || || || | | || ||||| ||| Sbjct 123126 GACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTGGA 123185 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || || || || || || | |||||| ||||| Sbjct 123186 GGAATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTTCA 123245 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || ||||| | ||||||||||| || ||||| Sbjct 123246 ACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 >seq429 Length=41586 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| ||||| || || ||||| || ||||| | || || || ||||| Sbjct 1134 TGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCCTCGAGTTGC 1193 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | || ||||| || || ||||| || || || || ||||| Sbjct 1194 TTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 1253 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||||| ||| || ||||| || || || |||||||| || Sbjct 1254 GCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTC 1313 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | |||||||| || ||||||||||| Sbjct 1314 AAAGTTTTTACGAAAATCTGCATTTT 1339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151329801842200