Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq95 129 3e-25 seq1035 122 5e-23 seq2169 120 2e-22 seq614 120 2e-22 seq3134 118 6e-22 seq2226 118 6e-22 seq65 118 6e-22 seq622 114 7e-21 seq259 114 7e-21 seq3559 113 2e-20 seq1231 113 2e-20 >seq95 Length=91168 Score = 129 bits (142), Expect = 3e-25 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 22429 AATAAAAA--CAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 22486 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 22487 GACGCTCTAACCAACTGAGCTAATGGGCC 22515 >seq1035 Length=227297 Score = 122 bits (134), Expect = 5e-23 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 191952 AAAACCTAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 191893 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 191892 TCTAACCAACTGAGCTAATGGGCC 191869 Score = 122 bits (134), Expect = 5e-23 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 192113 AAAACCTAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 192054 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 192053 TCTAACCAACTGAGCTAATGGGCC 192030 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| | || |||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 192274 AAAAACTAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 192215 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 192214 TCTAACCAACTGAGCTAATGGGCC 192191 >seq2169 Length=164568 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 31321 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 31262 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 31261 CAACTGAGCTAATGGGCC 31244 Score = 120 bits (132), Expect = 2e-22 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||| | | |||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 34191 ATCAAAATTTAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 34132 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 34131 ACGCTCTAACCAACTGAGCTAATGGGCC 34104 Score = 120 bits (132), Expect = 2e-22 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| |||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 35291 TAATCAAAATATAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 35232 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 35231 CGACGCTCTAACCAACTGAGCTAATGGGCC 35202 Score = 114 bits (126), Expect = 7e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 32691 AAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 32632 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 32631 AACTGAGCTAATGGGCC 32615 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 33737 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 33678 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 33677 TGAGCTAATGGGCC 33664 >seq614 Length=277369 Score = 120 bits (132), Expect = 2e-22 Identities = 86/98 (88%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||| ||| || |||| ||||||||||||| |||||||||| |||||||||||| Sbjct 24167 TATAG--TTAGCAATAAAT--AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 24222 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 24223 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 24260 Score = 118 bits (130), Expect = 6e-22 Identities = 86/98 (88%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 11435 AGAATTAATAA--AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||| |||| || ||||| | || |||||||||| |||||||||| |||||||||||| Sbjct 24369 AGATTTAAAAACTAAAATTACATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 24428 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 24429 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 24466 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | ||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 3207 AAAATTAGATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 3266 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 3267 CTCTAACCAACTGAGCTAATGGGCC 3291 >seq3134 Length=552506 Score = 118 bits (130), Expect = 6e-22 Identities = 90/106 (85%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAA-ATCAAA------TTGGCCCATGAAAGGATCGAACCTTCGAC 11483 || || ||||| |||||| || ||| ||||||||||| |||||||||| |||| Sbjct 218623 ATTTATAATTATTAAAAATATAAAACAGAATTTGGCCCATGAGGGGATCGAACCCGCGAC 218564 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 218563 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 218518 >seq2226 Length=43108 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||| | |||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 38629 AAAATCTATGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 38570 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 38569 TCTAACCAACTGAGCTAATGGGCC 38546 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 38942 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 38883 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 38882 TGAGCTAATGGGCC 38869 >seq65 Length=42987 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| | ||| || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 5084 AATTATAAAAGAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 5025 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 5024 GACGCTCTAACCAACTGAGCTAATGGGCC 4996 >seq622 Length=277177 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 198306 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 198247 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 198246 CTGAGCTAATGGGCC 198232 >seq259 Length=139376 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 33335 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 33276 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 33275 CTGAGCTAATGGGCC 33261 >seq3559 Length=164839 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 29136 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 29195 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 29196 TGAGCTAATGGGCC 29209 >seq1231 Length=83261 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 63797 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 63856 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 63857 TGAGCTAATGGGCC 63870 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476380803400