Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4450 203 3e-47 >seq4450 Length=177458 Score = 203 bits (224), Expect = 3e-47 Identities = 566/872 (65%), Gaps = 4/872 (0%) Strand=Plus/Plus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 || || || | |||| | |||||||| ||||| || ||||| || | ||||| ||| Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAAT 21307 ||||||| || |||||| || | | |||| | |||| |||| | | Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAGATTTCAGCGATTCCCAAATCTGCCAGCAGC 24144 Query 21308 CTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTT 21367 | || || || ||||| || |||| |||||| | | | |||||||| |||||||| | Sbjct 24145 TTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAGAT 24204 Query 21368 ACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTT 21427 ||||| || |||| || | ||| | ||| || ||||| || || || || Sbjct 24205 ACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGTTC 24264 Query 21428 ATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 | | ||| | || ||| | || | || |||||||||||||| || || | Sbjct 24265 TTGACCCTC--TCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAATT 24322 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 || |||| |||||||||| || || || || || || || | ||||||||| | Sbjct 24323 TGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATCA 24382 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 ||||| |||| || | ||| || || || || || || || |||||||| ||||| | Sbjct 24383 ATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCCA 24442 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | || ||||| || || | | ||||||| |||| | ||||| | | ||||| ||| Sbjct 24443 CTGCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAATTTA 24502 Query 21666 CTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAt 21725 ||||| | ||||| | ||| | || ||| || ||||| || || | |||| | Sbjct 24503 ACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAAAC 24562 Query 21726 ttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTA 21785 |||| || | ||||| | || ||| ||||| || |||| Sbjct 24563 TTTTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGTGTA 24622 Query 21786 TATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGG 21845 | || || || || ||||| | || || || || ||||||| | ||| || || Sbjct 24623 TGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTACTTCTT 24682 Query 21846 AATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCA 21905 | |||| | ||| ||||||||| || || |||||| ||| ||||||||||||| Sbjct 24683 TACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATGCCA 24742 Query 21906 ATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTT 21965 | | || || || |||| | || || || | ||||| ||||||| | || | Sbjct 24743 ACACATACTTGATGAAATGTTTCTCATTTGAAGTCATTTTTTCCCAATCTTTGTAGTCCT 24802 Query 21966 TTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCC 22025 | || ||||| ||||| | | ||||||| || ||| | || |||||| ||| Sbjct 24803 TCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATACATCTTCC 24862 Query 22026 AGATATCATTATATATTATTGGAAATATTACA 22057 | || |||||||| | ||||| || | |||| Sbjct 24863 ACATGTCATTATAGACGATTGGGAACACTACA 24894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531869883266000