Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq830 102 7e-17 seq1636 82.4 7e-11 >seq830 Length=194395 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||||||| | |||||| | ||||| || ||| | Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAA-CCATC 124623 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| || || ||||| ||||| || || || ||||| Sbjct 124622 TGACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 124563 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || || |||||| | ||||||| ||| | | || || || Sbjct 124562 ACAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAA 124503 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| ||||| || ||||||| || || Sbjct 124502 CATTCAAAAGGAATCCACCCTTCATTTGGTATT 124470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| || ||||||||| | || ||| | ||||| || | | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || || ||| ||||| ||||| || ||||| ||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || || || | || |||| ||| | | | ||||| || Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAAT 123116 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || ||||| ||||||||| | ||||| || || Sbjct 123115 ATCCAAAAGGAATCTACATTACATTTGGTTTT 123084 >seq1636 Length=121147 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 101014 CAAGGCTTACACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCACGTCT 101073 || ||| | ||||| || || | ||||| ||||| |||| | |||||| |||| || Sbjct 3125 CAGGGCCTCCACGGATTCCACATCCACGAGTTCGGTGACAACACCAACGGTTGCATCTCG 3066 Query 101074 GCGGGCGAACATTTTAACCCTACGGGCATGGCTCACGGCGCACCCAACTCTGCCGTTCGT 101133 || || || || || || ||||| || |||||||| |||| ||| | ||| ||| Sbjct 3065 GCCGGGCCCCACTTCAATCCGCAGGGCAAGGATCACGGCGGTCCCACCTCCGACGTACGT 3006 Query 101134 CACGTCGGTGATCTTGGCAA 101153 ||||||||||| || ||||| Sbjct 3005 CACGTCGGTGACCTGGGCAA 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429911634720750