Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1314 161 9e-35 seq1636 104 2e-17 seq830 104 2e-17 seq429 104 2e-17 >seq1314 Length=49468 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | |||||||||||| || |||||||| ||| Sbjct 22008 CCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 22067 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| ||||| ||||| || || ||| Sbjct 22068 AGGGTGCGTCCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGG 22127 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||| | | || | |||||||| || ||||| Sbjct 22128 ATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACC 22187 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 22188 TCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq1636 Length=121147 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 51801 GGCCTCTATGTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTG 51860 |||||||| |||||| || || || ||||| || || ||||| |||| ||||||| | Sbjct 2976 GGCCTCTACGTTGCCCAGGTCACCGACGTGACGTACGTCGGAGGTGGGACCGCCGTGATC 3035 Query 51861 TTTGCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAA 51920 ||||| | ||||| ||||| ||||| || |||| |||||| || |||| ||||| Sbjct 3036 CTTGCCCTGCGGATTGAAGTGGGGCCCGGCCGAGATGCAACCGTTGGTGTTGTCACCGAA 3095 Query 51921 CTCGTGCACGTGAAAGCCGTGCAGTCC 51947 |||||| | ||| || ||||| || || Sbjct 3096 CTCGTGGATGTGGAATCCGTGGAGGCC 3122 >seq830 Length=194395 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| | ||||| ||| | ||| |||||||| |||||||| ||||| | Sbjct 122841 CCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCGAC 122900 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| | ||||| || || | || ||||| |||||||| ||||| Sbjct 122901 AAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAGGA 122960 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| ||| | | ||| | || || | | ||| | Sbjct 122961 ATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCACC 123020 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | |||||| |||||||||||||| Sbjct 123021 TCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||| | ||| || |||||||| |||||||| || | Sbjct 123999 CCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAC 124058 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | || || || ||| |||| ||||| ||||| || ||||| Sbjct 124059 AGAGTCCTGCCA-TCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAGG 124117 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| |||||| ||||| | || | || || | | || | Sbjct 124118 GATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAAC 124177 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | ||||| ||||| |||||||| Sbjct 124178 TTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| || ||||| | ||| || ||||||||||||||||| || | Sbjct 124455 CCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGAC 124514 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | ||||| || ||| |||| ||||| || || || || || Sbjct 124515 AGAGTCCTGCCA-TCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGG 124573 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| |||||| |||| | || | || || | | || | Sbjct 124574 GATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAAC 124633 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || | ||||| || || |||||||| Sbjct 124634 TTCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||||| || ||||| | || || ||||| || || |||||||| | Sbjct 123525 CCTCCACGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGAC 123584 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | || || || ||| |||||||||| ||||| || || || Sbjct 123585 AGAGTCCTGCCA-TCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGG 123643 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| |||||| ||||| | || | ||||||| | || | Sbjct 123644 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAAC 123703 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || | ||||| ||||| |||||||| Sbjct 123704 TTCCAAAGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 123751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| | || || || | ||| || ||||| || |||||||| || | Sbjct 122613 CCTCCACGCAAACGTAAAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGAC 122672 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | |||||||| || | || ||||||||||| || || || Sbjct 122673 AGAGTTCTGCCA-TCTTCCAATTGCTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGG 122731 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 |||||||| || || |||||| |||| | | | ||| | ||||| | | || | Sbjct 122732 AATTCCTTCCTTATCCTGGATTTT-GGCTTTAACGTTCTCGATTGTATCAGACGGTTCCA 122790 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | |||||||||||| |||||||| Sbjct 122791 CCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCAT 122839 >seq429 Length=41586 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | || || ||||| || |||||||| || || || || Sbjct 1122 CGGAGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCA 1181 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || ||||| || ||| |||| | ||| ||||| || || || ||||| || ||| Sbjct 1182 TCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTG 1241 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | ||||||| | ||||| || | ||| | | Sbjct 1242 TCTTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATG 1301 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || | ||||||||||||||||||||| Sbjct 1302 GTCTTACCCGTCAAAGTTTTTACGAAAATCTGCAT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471985364256000