Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2986 147 1e-30 seq830 143 2e-29 seq4492 113 3e-20 seq891 113 3e-20 seq429 109 4e-19 seq1314 102 5e-17 seq2214 100 2e-16 seq3058 89.7 3e-13 >seq2986 Length=174439 Score = 147 bits (162), Expect = 1e-30 Identities = 206/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | | | |||||||| | || ||| || | |||||| |||||||||||||| Sbjct 104826 ATGGGCAGCGTCAACGTAAACAGGAACGTGAGCGATGTGTTCTATCGCTACAAAATGCCA 104885 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 | ||| || ||||| ||||| || || || || || ||||| || |||||||| ||| Sbjct 104886 AGAATCCAGGCGAAGGTGGAGGGCAAAGGCAATGGCATCAAAACTGTAATTGTCAATATG 104945 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || ||||| || | | | ||| |||| || || || ||||| || |||||| Sbjct 104946 GCCGAGGTGGCTAAAGCTTTGAGCAGGCCTCCCACATATCCCACTAAATACTTTGGGTGC 105005 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 || | || || || ||||| ||||| ||| |||||||| ||||| || ||||| || Sbjct 105006 GAGTTGGGAGCCCAAACGCAATTTGACTTCAAGAACGAGCGATTCATTGTGAACGGTTCA 105065 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGT 6450 || | | ||| |||| || || || ||||| ||||| | |||| Sbjct 105066 CACGATGCCAGCAAATTGCAAGATTTGCTCGACGGATTTATCAGAAAGT 105114 >seq830 Length=194395 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| |||||||| |||||| ||||| || ||||||||||||| Sbjct 123523 TACCTCCACGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAG 123582 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || |||||||| ||||| || |||| ||||| ||||| | || Sbjct 123583 ACAGAGTCCTGCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGG 123642 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||||| ||| || || | | ||||| ||||| Sbjct 123643 GGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAA 123702 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || |||||||| || ||||||||||| ||||| |||||||| Sbjct 123703 CTTCCAAAGTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 123751 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| |||||||| |||||| ||||| || || ||||| |||| Sbjct 123295 TACCTCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 123354 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || || ||||| |||||||| || | ||||| ||||| | || Sbjct 123355 ACAGAGTCCTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGG 123414 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || ||| ||||| | | ||| || | |||| Sbjct 123415 GGATCCCTTCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAA 123474 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| || ||||||||||| || |||||||| Sbjct 123475 CCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTGCAT 123523 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||||||||| ||| ||||||||||| ||||| || | Sbjct 124453 TACCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCG 124512 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || ||||| || || || || || | ||||||||||| | | Sbjct 124513 ACAGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTG 124572 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||||| || ||||| | | || || ||||| Sbjct 124573 GGATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAA 124632 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || ||||||||||| || || |||||||| Sbjct 124633 CTTCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 Score = 116 bits (128), Expect = 2e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 38136 ATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGT 38195 |||||||||||||||| | | | || || |||||||||||||| || |||| ||| Sbjct 123816 ATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGT 123875 Query 38196 TGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTA 38255 || ||||| | ||||| ||||| ||||| ||||| ||| || |||| | ||| Sbjct 123876 TGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTA 123935 Query 38256 TCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGC 38315 || |||||||||||| || || ||||| || ||||| ||||| ||||| |||||| Sbjct 123936 TCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGC 123995 Query 38316 AT 38317 || Sbjct 123996 AT 123997 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | |||||| |||||||| | || |||||||| |||||||||| Sbjct 123065 CATT-CCGCCTCGAAGACGCAAAACCAAATGTAATGTAGATTCCTTTTGGATATTGTAAT 123123 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| | | || || || ||||| || || || || | ||||| ||||| | Sbjct 123124 CAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAAGATCAAACGTTGCTGATCTG 123183 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| ||||| |||||| ||| || |||| | ||||| || Sbjct 123184 GAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCGGATGGTT 123243 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || || ||||| || ||||||||||| || || || ||||| Sbjct 123244 CAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 123295 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| ||||| | ||| || ||| |||||| ||||| || ||||| | Sbjct 122839 TACCACCACGCAGACGTAACACTAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCCG 122898 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || ||||| || || ||||| || | ||||| || || | | Sbjct 122899 ACAAAGTTCTACCATCCTCCAATTGCTTACCCGCAAAAATCAAACGTTGCTGGTCTGGAG 122958 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| |||||| ||| || |||| | || || || | Sbjct 122959 GAATACCTTCTTTGTCTTGAATTTTAGCCTTTACGTTCTCAATTGTGTCCGATGGCTCCA 123018 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| || |||||||| ||||||||||| |||||||| Sbjct 123019 CCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTCACGAAAATCTGCAT 123067 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||||||||| || |||||||| || ||||| || | Sbjct 123997 TACCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTG 124056 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || |||||||| || || || || | ||||| ||||| | | Sbjct 124057 ACAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGAG 124116 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||||| ||| || || | | || || ||||| Sbjct 124117 GGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCAA 124176 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 124177 CTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| || ||||| ||||| ||||| || || ||||| || | Sbjct 124225 TACCTCCACGAAGACGCAATACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 124284 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || |||||||| || ||||| || | ||||| ||||| | | Sbjct 124285 ACAGAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 124344 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||||| ||| || || | | || || ||||| Sbjct 124345 GAATTCCTTCCTTGTCTTGGATTTTGGCCTTTACGTTTTCAATTGTGTCAGATGGTTCAA 124404 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||||||||| || ||||||||||| ||||| |||||||| Sbjct 124405 CTTCCAAGGTAATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 124453 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | |||||| || |||||||| || |||||||| || ||||| || | Sbjct 124681 TACCTCCACGAAGACGCAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCG 124740 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || |||||||| || || || || | ||||| ||||| | | Sbjct 124741 ACAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTG 124800 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| ||| || ||||||||| | | ||||| |||| Sbjct 124801 GGATTCCCTCTTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAA 124860 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| || ||||||||||| || |||||||| Sbjct 124861 CCTCCAAAGTGATGGTTTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 124909 >seq4492 Length=2735 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 9/95 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 1095 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 1154 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | ||||||||||||||||||| |||||||| Sbjct 1155 T----CATTCATGCGCGTCACTAATTGGATGACGA 1185 >seq891 Length=1269 Score = 113 bits (124), Expect = 3e-20 Identities = 85/100 (85%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GG 25947 |||| || ||| |||||||||||| || | ||||||||||||||||||||| || Sbjct 100 GTTTGTACCAAGACCGTTCCCTTGGTCGTAGGTTCGCTAGATAGTAGATAGGGACAATGG 41 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||||||||||||| |||||||||||||||||||||||| Sbjct 40 GAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 1 >seq429 Length=41586 Score = 109 bits (120), Expect = 4e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| || | || | ||||| || | |||| ||||| || || ||||| || || Sbjct 1109 ACCACCCCTGAGGCGGAGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGA 1168 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| | || || | ||| || ||||| || || || ||||| ||||| | ||| Sbjct 1169 CAGAGTACGTCCATCCTCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGG 1228 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || ||||| || || ||||||||||| || ||||| | || || Sbjct 1229 AATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGAC 1288 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTAC 38324 || | || || || ||||||||||| ||||| ||||| |||||||| || ||| Sbjct 1289 CTCAAGGGTGATGGTCTTACCCGTCAAAGTTTTTACGAAAATCTGCATTTTCTAC 1343 >seq1314 Length=49468 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| || || || |||||| || || ||||| || | Sbjct 22006 TACCACCACGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 22065 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || ||||| || || | ||||| ||||| | || Sbjct 22066 AGAGGGTGCGTCCATCCTCGAGCTGCTTACCGGCGAAGATCAAACGTTGCTGATCTGGGG 22125 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||||||| || || ||||||||| | || |||||| || | Sbjct 22126 GGATTCCCTCTTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTATCGGAGGGCTCGA 22185 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || |||||||| | |||||||||||| || ||||| Sbjct 22186 CCTCGAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAAATTTGCAT 22234 >seq2214 Length=49134 Score = 100 bits (110), Expect = 2e-16 Identities = 70/80 (88%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| | |||||||||||||||| || |||||||| Sbjct 14599 AAGCCCGTTCCCTTGGCAGTGGTTTTGTTAGATAGTAGATAGGGACAGAGGGAATCTCGT 14658 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 14659 TAATCCATTCATGCGCGTCA 14678 >seq3058 Length=26471 Score = 89.7 bits (98), Expect = 3e-13 Identities = 70/84 (83%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 25913 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCA 25967 ||||| ||||||||| |||||||||||||||| | ||||||||||||| |||| Sbjct 5948 CTTGGTAGTGGTTTCGATAGATAGTAGATAGGGACAGAGAGAATCTCGTTAATCTATTCA 6007 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 || |||||||||||| |||||||| Sbjct 6008 TGTGCGTCACTAATTGGATGACGA 6031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928217914150