Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq830 120 3e-22 >seq830 Length=194395 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || |||||||| || || | ||||| | || |||||| | || Sbjct 123068 AATGCAGATTTTCGTGAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAGCCATC 123009 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| | ||| | |||| ||| ||||||||||| ||||| || |||| Sbjct 123008 GGACACAATTGAGAACGTAAAGGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCAGACC 122950 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | |||||||| || || ||||| || |||| | | ||| || ||||| | Sbjct 122949 AGCAACGTTTGATTTTTGCGGGTAAGCAATTGGAGGATGGTAGAACTTTGTCGGATTATA 122890 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 | ||||| || || ||||| || ||| ||||| || Sbjct 122889 ACATTCAGAAGGAGTCCACCCTCCATCTAGTGTTA 122855 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || || || |||||| ||||||| | || || ||| | ||| Sbjct 123523 ATGCAGATTTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCTTCT 123464 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | || || | ||| ||||| |||||||| || || || Sbjct 123463 GACACTATTGAAAATGTCA---AGGCTAAGATTCAA-GACAAGGAAGGGATCCCCCCAGA 123408 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || | ||||||||||| ||||| || ||||||| | ||| || || || Sbjct 123407 TCAGCAACGTTTGATTTTTGCCGGTAAACAGTTGGAAGATGGCAGGACTCTGTCTGACTA 123348 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| || || || |||||||| || ||||| || Sbjct 123347 CAACATCCAGAAGGAATCCACTCTCCATTTGGT 123315 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || ||| ||||||| | ||||| || | || Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | |||| ||| ||||| ||||| ||||| || || || Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 123177 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || || || ||||| || || |||| | || || |||||||| Sbjct 123176 GCAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAA 123117 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| ||||| ||||| || ||||||| || Sbjct 123116 TATCCAAAAGGAATCTACATTACATTTGGT 123087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || ||| | ||||| | ||||| || | || Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| |||||| ||||| ||||| || || || || || Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||| ||||||| | ||| || ||||||||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || |||||||| || ||||| || Sbjct 123571 ATCCAGAAGGAATCCACTCTCCATTTGGT 123543 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || ||| ||||||| | ||||| || | || Sbjct 123997 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATCACTTTAGAAGTTGAACCATCC 123938 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| |||||| ||||| ||||| || || || || || Sbjct 123937 GATACAATTGAGAACGTTAAGGCCAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123878 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| |||||||| ||||||| | ||| || ||||||||| Sbjct 123877 CAACGTTTAATCTTCGCCGGAAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123818 Query 25179 AT 25180 || Sbjct 123817 AT 123816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433303442489750