Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4450 277 2e-69 seq4214 132 5e-26 seq2956 132 5e-26 seq699 132 5e-26 seq3417 123 3e-23 seq1447 122 1e-22 seq2085 120 3e-22 >seq4450 Length=177458 Score = 277 bits (306), Expect = 2e-69 Identities = 607/897 (68%), Gaps = 22/897 (2%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 |||||||| |||||||| ||||| |||||||| || ||||| || | ||||| || | Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT---CAACTCGTACAAT 92920 | | ||| ||||| | ||| | || ||||| |||| ||| || || Sbjct 24085 ATAAAATTGAAGGGATT--TCGCGAG-TGGTAGATTTCAGCGATTCCCAAATCTGCCAGC 24141 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 | | ||||| || ||||| ||||| | | |||| | | |||||||| || | | | Sbjct 24142 AGCTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAA 24201 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 |||||| || || ||||| |||||| || | ||||| ||||| ||| | | ||| Sbjct 24202 GATACAGGCAGGGCTTCGGT-AAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGAT 24260 Query 93040 -TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| | || || | || || || || ||||| | || |||| || ||||| | Sbjct 24261 GTTCT-TGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGA 24319 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | | | || | |||| || | || |||||||| ||| ||| || | ||| || | Sbjct 24320 ATTTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCA 24379 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || |||| ||||| ||||| || || || || ||||| || || || || ||||| | Sbjct 24380 TCAATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCT 24439 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 |||| |||||||| || || | | ||| | || | || | |||| ||||| | Sbjct 24440 CCACTGCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAAT 24499 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 |||| |||||||| || || || || | || || | ||||| || || |||| || Sbjct 24500 TTAACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAA 24559 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 || | ||| | | |||| || || || || || |||| | ||||| || | Sbjct 24560 AACTTTTCTCCTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGT 24619 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | |||||||| ||||| || | || ||||| || | || || | | || |||| Sbjct 24620 GTATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTACTT 24679 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 ||| | ||||||||||| || ||||||||||| |||||||| || || |||||||| | Sbjct 24680 CTTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATG 24739 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG----CTTATCCCAATC-GGA 93573 |||| | || ||| || ||||||||||||| || ||| || |||||||| Sbjct 24740 CCAACACATACTTGATGAAATGTTTCTCAT----TTGAAGTCATTTTTTCCCAATCTTTG 24795 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 ||| || || || | ||| ||||| | || ||||||| || || || |||| || || Sbjct 24796 TAG-TCCTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATA 24854 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 ||| | ||| ||||| | ||| ||||| || | ||| |||| || |||||||| Sbjct 24855 CATCTTCCACATGTCATTATAGACGATTGGGAACACTACATAACGTTTGGGGTTATC 24911 >seq4214 Length=55974 Score = 132 bits (146), Expect = 5e-26 Identities = 87/95 (92%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 2891 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 2950 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| ||| || Sbjct 2951 GTGGGTTCGAACCCCACACCTGACAAACCATTTTT 2985 >seq2956 Length=22598 Score = 132 bits (146), Expect = 5e-26 Identities = 87/95 (92%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 20854 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 20795 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| ||| || Sbjct 20794 GTGGGTTCGAACCCCACACCTGACAAACCATTTTT 20760 >seq699 Length=70365 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 13761 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGC 13702 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 13701 GTGGGTTCGAACCCCACACCTGACAAA 13675 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||| Sbjct 12884 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGATTGGGAGCG 12825 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 12824 TGGGTTCGAACCCCACACCTGACAA 12800 >seq3417 Length=391282 Score = 123 bits (136), Expect = 3e-23 Identities = 88/99 (89%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 ||||||||||||||||||| |||||||||||||||||||||| |||||||| | | | Sbjct 109564 TACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGTG 109505 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT-TATTATT 126357 |||||||||||||||||||||||||||| || |||| || Sbjct 109504 AGCGTGGGTTCGAACCCCACACCTGACAGATCTATTTTT 109466 >seq1447 Length=136580 Score = 122 bits (134), Expect = 1e-22 Identities = 92/107 (86%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 81952 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 82011 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||| | || | ||||||||| Sbjct 82012 GTGGGTTCGAACCCCACACCTGACAATCTCTTTT----ATTTTTGTT 82054 >seq2085 Length=34358 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 26742 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 26683 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 26682 GTGGGTTCGAACCCCACACCTGACA 26658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556828432466000