Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq830 113 4e-20 >seq830 Length=194395 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| |||| || |||||||| ||| | ||| ||||| | Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || |||||| ||||| ||||| |||| ||||| Sbjct 123235 GATACAATTGAGAACGTTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAG 123176 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||| ||||| ||| | || || | ||||| ||| Sbjct 123175 CAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAAT 123116 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||||||| ||||||| || |||||||| || || || Sbjct 123115 ATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGG 123069 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||| || ||||| |||| || || || || || |||| ||| || Sbjct 123068 AATGCAGATTTTCGTGAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAGCCATC 123009 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | ||||| |||||| ||||||||||| |||| || || Sbjct 123008 GGACACAATTGAGAACGTAAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 122949 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| | | |||| |||||| || |||||||| ||| || |||| || | |||||||| Sbjct 122948 GCAACGTTTGATTTTTGCGGGTAAGCAATTGGAGGATGGTAGAACTTTGTCGGATTATAA 122889 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || ||| ||||||| |||||||| ||||| Sbjct 122888 CATTCAGAAGGAGTCCACCCTCCATCTAGTGTTACGTCTGCGTGGTGG 122841 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || || ||||| |||| || ||||| |||||| ||||| ||||| Sbjct 124453 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCT 124394 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | ||||| ||||| ||||| ||||| |||| ||||| Sbjct 124393 GACACAATTGAAAACGTAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 124334 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || ||||||||||||||| | ||| || |||| || || Sbjct 124333 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAAC 124274 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || |||||||| |||||||| || || || Sbjct 124273 ATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGTCTTCGTGGAGG 124227 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| || |||||||||||| ||||| ||||| Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCT 124622 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| ||||| ||||| ||||| | || |||||| Sbjct 124621 GACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 124562 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || || |||||||||||| | ||| || | || || || Sbjct 124561 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124502 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| || || ||||| || |||||||| |||||||| Sbjct 124501 ATTCAAAAGGAATCCACCCTTCATTTGGTATTGCGTCTTCGCGGTGG 124455 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || || ||||| |||| || ||||| || || ||||| ||||| | Sbjct 123751 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATCACTTTGGAAGTTGAACCATCC 123692 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||||| ||||| ||||| | ||| ||||| Sbjct 123691 GATACAATTGAAAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 123632 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| | ||| || | ||||| ||| Sbjct 123631 CAACGTTTAATCTTCGCCGGTAAACAATTGGAAGATGGCAGGACTCTGTCTGATTACAAT 123572 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || ||||| || |||||||| || || || Sbjct 123571 ATCCAGAAGGAATCCACTCTCCATTTGGTATTGCGTCTTCGTGGAGG 123525 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || || || ||||| |||| || ||||||||||| ||||| ||||| Sbjct 124225 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCT 124166 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||| ||||| ||||| | || ||||| Sbjct 124165 GACACAATTGAAAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 124106 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| | ||| || | || || || Sbjct 124105 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAAC 124046 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || ||||| || |||||||| || ||||| Sbjct 124045 ATCCAAAAGGAATCTACCCTTCATTTGGTATTGCGTCTTCGTGGTGG 123999 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| | || || |||||||| || |||| || ||| Sbjct 124909 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCCTCT 124850 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || || ||| |||||||| || | || ||||| Sbjct 124849 GATACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAAGAGGGAATCCCACCTGATCAG 124790 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | || || ||||||||||||||| | ||| || | || || || Sbjct 124789 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124730 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||||||||| |||||||| |||||||| || || || Sbjct 124729 ATCCAAAAGGAATCTACACTTCATTTAGTATTGCGTCTTCGTGGAGG 124683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423016025530000