Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq830 125 2e-23 >seq830 Length=194395 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || | || ||||| ||||| || || || || Sbjct 122648 TTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTGCCAGCAAA 122707 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| |||||| ||| ||| |||||||| |||||||||||||| ||||| ||||| Sbjct 122708 AATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTT 122767 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || ||| || || | ||||| ||||| || |||| ||| || || Sbjct 122768 CTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTTTTTAC 122827 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 122828 GAAGATCTGCAT 122839 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | | ||| | ||||| ||| ||| ||||| || || ||||| | Sbjct 124455 CCACCGCGAAGACGCAATACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAGTCCGAC 124514 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| ||||| || || |||||||||| ||| |||||| |||| Sbjct 124515 AGAGTCCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGTGGG 124574 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || |||||||| ||||| || ||||| || | || | ||| ||| Sbjct 124575 ATTCCTTCCTTGTCTTGGATTTTGGCTTTGACATTTTCAATTGTGTCAGATGGTTCAACT 124634 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || |||| || || || || |||||||| Sbjct 124635 TCCAAGGTAATGGTTTTTCCAGTCAAGGTTTTAACAAAGATCTGCAT 124681 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| | ||| | ||| ||| || |||||||| || || | || || | || ||||| Sbjct 123542 TACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTCCTGCCATCTTC 123601 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATC 288380 |||||||| || |||||||| | ||| || ||| |||||| |||||||| || || Sbjct 123602 CAATTGTTTACCGGCGAAGATTAAACGTTGCTGA---TCTGGGGGGATTCCTTCCTTGTC 123658 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||||| || || |||||||| || | |||| | ||| ||||| | ||||| || Sbjct 123659 TTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAAAGTGATAGT 123718 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||| || || ||||| |||||||| Sbjct 123719 TTTTCCAGTCAAGGTTTTAACGAAGATCTGCAT 123751 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | ||| | ||||| || ||| |||||||| || ||||| | Sbjct 123999 CCACCACGAAGACGCAATACCAAATGAAGGGTAGATTCCTTTTGGATGTTGTAGTCTGAC 124058 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || | || ||||| |||||||| || |||||||||| ||| || ||| ||||| Sbjct 124059 AGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGA---TCTGGA 124115 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||| || || |||||||| || || |||||||| || | || | ||| Sbjct 124116 GGGATTCCTTCCTTGTCTTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGATGGTTCA 124175 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || || || || |||| || || ||||| |||||||| Sbjct 124176 ACTTCCAAAGTAATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTGCAT 124225 Score = 113 bits (124), Expect = 1e-19 Identities = 138/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349 ||||||| || || | || || | || ||||| ||||||||||| |||||||| | || Sbjct 123814 GGATATTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAAC 123873 Query 288350 GCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTA 288406 | || || |||| ||||||||||| || || |||||||| || || ||||| || | Sbjct 123874 GTTGCTG---ATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAA 123930 Query 288407 TAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 | | |||| | ||| ||||| | ||||| || || || |||| || || ||||| | Sbjct 123931 TTGTATCGGATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGA 123990 Query 288467 TCTGCAT 288473 ||||||| Sbjct 123991 TCTGCAT 123997 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| || || | | || | || || || || ||||| |||||||| Sbjct 123104 TTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCTGCGAA 123163 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| || || |||| || || ||||| || || || ||||| || || || Sbjct 123164 GATCAAACGTTGCTG---ATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTAAC 123220 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | |||| | ||| ||||| | ||||| || || || |||| || || Sbjct 123221 GTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTTTT 123280 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 123281 TACAAAAATTTGCAT 123295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179584118402700