Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1908 134 2e-26 seq4241 127 3e-24 seq4643 122 1e-22 >seq1908 Length=44741 Score = 134 bits (148), Expect = 2e-26 Identities = 345/519 (66%), Gaps = 21/519 (4%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||||||| | || || || || | || || ||||| || ||||| ||||| Sbjct 5834 CCACATATCATATTGTAGAATTCCCTTACTGGCCGGAGATCCTTCGTATGTCGAGTATGG 5775 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || || || || | ||| |||| | ||| | ||| | | ||| | ||||| || Sbjct 5774 TCCATCTCTTTCAGCAATTTCACAGCTGGACTCTAAAGCTCCATAATAAAGAGTCTCGAA 5715 Query 116184 AATGCGAGCATTCATTGCCTTG---GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAA 116239 || | |||| | |||| || || ||| || |||| || | || ||| | Sbjct 5714 TATCTGTACATTAA---CCTTTTGTGCTTCTTCGCTTTCGAACG-GAATCCTCATCAAGA 5659 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 |||| |||| || | || || | ||| | |||||||| |||||||||||||| || | Sbjct 5658 TAAAAGCATCGGCCAATCCCTGTATACCAATACCAATTGGACGATGTCTCATATTTGAGT 5599 Query 116300 TTCGAGC----GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 ||| ||| ||| || |||||| | || | ||||| | | | || |||||| | Sbjct 5598 TTCTAGCTTCAGGT----ACAGGATAATAGTTGATGTCGATGATCTTGTTCAGATTTCTA 5543 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC-TCTTCATT 116414 || || | || || | ||| | | || | | || ||| || | ||| || Sbjct 5542 GTAACTAGTTTGGTAAGTTCCTTTAATTTGATGAAGTCGAAA----GATTTATCTGGCTT 5487 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 ||| || || || ||| || ||||||| ||| || || | || ||||| |||| Sbjct 5486 TACAAACATATTAACGGCAATGGACGCCAAATTGCAGACGGCAGTTTCATCGGGCGCAGT 5427 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 || || |||||||| || |||| ||| || ||||| || || ||||| |||||||| || Sbjct 5426 ATATTCCATAATTTCTGTGCACAGATTCGAGCTCTTGATTGTCCCCAAATTCTTTTGGTT 5367 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 ||||| ||| || ||||||||||| |||||||| || Sbjct 5366 ACTCTTTGAGTTGCAGGCATCCTTGTACAGCATATAAGG 5328 >seq4241 Length=192509 Score = 127 bits (140), Expect = 3e-24 Identities = 687/1081 (64%), Gaps = 19/1081 (2%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||| ||||| | ||||| || || ||| |||| ||||| || || |||||||| ||| Sbjct 52021 ATAAATGTTACTTGTGTACGGTTCGAAGGACTCGTTGTTTCCTAAAATTTGGGCAGTGCT 52080 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 ||||| ||||| ||||| | || || || | || || | || ||| Sbjct 52081 AGCTGTTGGCATAGGTGCAAGAAGGAGAGAATTCCTGATTCCGTGCTTGGCGATTTTTTC 52140 Query 116022 CTTGAGGGCGTCCCAGTCG--TAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 ||| | |||| |||| || ||| | | || || | | ||| ||||||| | ||| Sbjct 52141 CTTTAAGGCGGCCCAATCCCATAGGTCTG-TTGGTGTTACATTCC-ACATATCGTATTGG 52198 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || || || | | || || ||||| | | | || ||| || || || || || Sbjct 52199 AGAATTCCCTTGCTGGCCGGAGATCCTTTATAAGTTGAATACGGTCCATCTCTTTCAGCG 52258 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA-- 116197 | ||| |||||| || | ||| | | || | ||||| || || | |||| | Sbjct 52259 ATTTCACAGCTCGTTTCTAAAGCTCCATAGTAAAGAGTCTCGAATATCTGTACATTTAAC 52318 Query 116198 TTGCCTTG-GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAG 116255 || ||| || || ||| || |||| || | || ||| ||||| |||| || | Sbjct 52319 TT---TTGTGCTTCTTCGCTTTCGAACG-GAATCCTCATCAAGATAAAAGCATCGGCCAA 52374 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 ||| || | ||||| |||||||| |||||||||||||| || |||| ||| ||| Sbjct 52375 ACCCTGTATACCGATACCAATTGGACGATGTCTCATATTTGAGTTTCTAGCTTCAGGCAC 52434 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||||| | || | ||||| | | | || |||||| | || || | || |||| ||| Sbjct 52435 AGGATAGTAGTTGATGTCGATGATCTTGTTCAGATTTCTAGTAACTAGTTTGGTGAGTTC 52494 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | || || | |||| || || | ||| || ||| || | || ||| || Sbjct 52495 CTTCAGTTTGATGAAATCGAA--TGATT-TATCTGGTTTTACAAACATGTTAACGGCAAT 52551 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 |||||| | |||||| || | || || || ||||||| || | ||||| || || Sbjct 52552 TGACGCTAAATTACAGACGGCAGTTTCGTCGGGCGCAGTGTATTCCACTATTTCTGTGCA 52611 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || || || || || || || ||||| |||| ||| || ||| | ||| || ||||| Sbjct 52612 CAGGTTCGAGCTTTTGATTGTCCCCAAATTCTGTTGGTTGCTCTTCGAGTTGCAGGCATC 52671 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 |||||| | ||| || || || ||| |||| || | | ||| || ||| || Sbjct 52672 CTTGTACATCATGTAAGGAACACCAACCTCAATTTGCGAGATAACAATTGCGCGCCAAAC 52731 Query 116616 ATCGGCGGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 || || || | | || ||| | || || | ||||| ||| ||||| Sbjct 52732 TTCTCTAGCCGGAATCTGT-TTGTTATATTTTCCTTCGGCTTCGTATTTTTCATAGAGCT 52790 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 || |||||||| ||| |||| || || | || || ||||| || || | || Sbjct 52791 TTTCGAACTCTTCGCCC-CAGCAGTCCGACAATCCAGGACACTTATGAGGGCACATCAGT 52849 Query 116734 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 116793 ||||| || | | |||| || || ||||| || | ||| || ||||| | || | Sbjct 52850 GACCAGACACTATCAGCCTCTACGCGTTTCATAAACAAGTCCGGTATCCACAAGGCATAA 52909 Query 116794 AAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 || | ||||| | | ||||||| ||| ||| || | || || ||| Sbjct 52910 AACAAATCCCTGGCTCTTTCCTCTTCATTTCCCGTATTCCTTTTCAGATTCACGAATTCC 52969 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGACCAGCC 116913 || || || || ||||| || |||| |||||||| | || || | | |||| | Sbjct 52970 ATAATGTCAGCATGCCAAGGCTCCAAATACACCGCAACGGAGCCAGGTCTTCTACCACCT 53029 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 ||||| || | |||||| ||| ||| || || | ||| || | || ||||| ||| Sbjct 53030 TGGTTCACGTGCCTCGCTGTTTGGTTGAACACTTTCAACATAGGCACAATTCCATCCGAT 53089 Query 116974 T 116974 | Sbjct 53090 T 53090 >seq4643 Length=985661 Score = 122 bits (134), Expect = 1e-22 Identities = 342/518 (66%), Gaps = 19/518 (4%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||||| | ||||| || || | || || ||||| || ||||| ||||| Sbjct 334026 CCACATATTGTATTGGAGAATTCCCTTACTGGCCGGAGATCCTTCGTATGTCGAGTATGG 333967 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || || || || | ||| |||| ||||| | ||| | | ||| | ||||| || Sbjct 333966 TCCATCTCTTTCGGCAATTTCACAGCTGGCCTCTAAAGCTCCATAATAAAGAGTCTCGAA 333907 Query 116184 AATGCGAGCATTCATTGCCTTG---GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAA 116239 || | |||| | |||| || || ||| || |||| || | || ||| | Sbjct 333906 TATCTGTACATTAA---CCTTTTGTGCGTCTTCGCTTTCGAACG-GAATCCTCATCAAGA 333851 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 |||| |||| || | || || | ||| | |||||||| |||||||||||||| || | Sbjct 333850 TAAAAGCATCGGCCAATCCCTGTATACCAATACCAATTGGACGATGTCTCATATTTGAGT 333791 Query 116300 TTCGAGC----GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 ||| ||| ||| || |||||| | || | ||||| | | | || |||||| | Sbjct 333790 TTCTAGCTTCAGGT----ACAGGATAATAGTTGATGTCGATGATCTTGTTCAGATTTCTA 333735 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415 || || | || || | ||| | | || | |||| || || | ||| || Sbjct 333734 GTAACTAGTTTGGTAAGTTCCTTTAATTTGATGAAATCGAA--TGATT-TATCTGGTTTT 333678 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| || || || ||| || || |||| |||||| || | || || || |||| Sbjct 333677 ACAAACATATTAACGGCAATGGATGCCAAATTACAGACGGCAGTTTCGTCGGGCGCAGTA 333618 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 || || || ||||| || |||| || || ||||| || |||||||| |||| ||| || Sbjct 333617 TATTCCATTATTTCTGTGCACAGGTTCGAGCTCTTGATTGTGCCCAAATTCTGTTGGTTA 333558 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGG 116573 ||||| ||| || ||||||||||| |||||||| || Sbjct 333557 CTCTTTGAGTTGCAGGCATCCTTGTACAGCATATAAGG 333520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613471539894000