Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4450 147 3e-30 seq1908 84.2 3e-11 >seq4450 Length=177458 Score = 147 bits (162), Expect = 3e-30 Identities = 514/793 (65%), Gaps = 16/793 (2%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||| ||||| || ||||| || || || || ||||| ||||| || ||| Sbjct 24037 ACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCCATAAAATTGAAG 24096 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || || | ||| ||| | | | ||| | | | ||||||| | |||| ||||| Sbjct 24097 GGATTTCGCGAGTGGTAGATTTCAGCGATTCCCAAATCTGCCAGCAGCTTGTCAGCCACG 24156 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||||||||| |||||| | | || || || || | || || || || ||| Sbjct 24157 AATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAAGATACAGGCAGGGCT 24216 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCG 159883 || | |||||||||| || |||| || || || | | || | | ||| | || Sbjct 24217 TCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATGTTCTTGACCCTCTCC 24276 Query 159884 TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | ||||| || | ||| |||||||| | ||||| || | |||||||| Sbjct 24277 TCTGAAGGCTTCTGCACGACGTG---CTTAAACATCAAACACGCGAATTTGCAGTGCATC 24333 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 | || |||| ||||| ||||||||||| | |||| || ||||| | || | Sbjct 24334 GCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATCAATCCTTTCTTC 24393 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 || ||||| || || | || ||| ||| || || || |||||||| || ||||| Sbjct 24394 TTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCCACTGCTGCAAAA 24453 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG--GTCCACCTTTTGGCCCATT 160121 || |||| ||| ||||| || | || || || | ||| |||| || ||||| | Sbjct 24454 GCGACGACCCTTTCACCGAATGTCGC-TTCTTGAC-TGGAAATCCAATTTAACGCCCAAT 24511 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA--AACAATCTGTCCTGCTC 160179 ||||||||||| | ||| || || || | || ||| || || | | ||| Sbjct 24512 CAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAAACTT--TTCTC 24569 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 ||||||||| ||||| ||| | |||| | |||||| || ||| | || || Sbjct 24570 CTTCACATCTTTGATATAAGTGTCTATCAACAAACTGTACATCAGTGAGTGTATGTTCTC 24629 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 ||||| ||||| | | ||||| || | ||||| | | || || || | |||| Sbjct 24630 CATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTACTTCTTTACTGAA 24689 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 || | |||| || |||| || | || || | ||| ||||| || |||||||| | Sbjct 24690 TCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAATGCCAACACATA 24749 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGG 160418 |||||||||| |||| |||| |||| | |||||||| | | | ||| | | Sbjct 24750 CTTGATGAAATGTTTCTC--ATTTG--AAGTCATTTTTTCCCAATCTTTGTAGTCCTTCG 24805 Query 160419 CCAAATCAACCTC 160431 ||||||||| || Sbjct 24806 ACAAATCAACTTC 24818 >seq1908 Length=44741 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 |||| || ||||| |||||||| ||| || || || || ||| ||||| |||||||| Sbjct 6265 GGGTTAGCTATGTGTATGTTCAGGCTCTGACTCTGATCAAT-AAATGCGCCACGATCTGC 6207 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||| ||||| | ||||||||||| ||||||||||| || || Sbjct 6206 GGACATGTTGATCACAGTCTTCTGCGAGATCTCCCACACAGTTTT 6162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795108981604000