Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1314 138 3e-27 seq830 127 5e-24 seq429 125 2e-23 seq4623 86.0 1e-11 >seq1314 Length=49468 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 |||||| ||||||||||| |||| ||||||||| | | || | |||||| || ||||| Sbjct 22031 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGCTG 22090 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||| ||||| || || ||||| ||| ||||| ||||| Sbjct 22091 CTTACCGGCGAAGATCAAACGTTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATCTT 22150 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||||| || || | | || || || | ||||| ||||||||||| Sbjct 22151 GGCCTTCACATTTTCGATAGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTTACCCGT 22210 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| Sbjct 22211 TAGGGTTTTCACGAAAATTTG 22231 >seq830 Length=194395 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||| || ||||| |||| ||||||||||| || |||| Sbjct 123303 CGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGAGTC 123362 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| ||| || ||||| || || | ||| ||||| || || || ||| Sbjct 123363 CTGCCATCTTCCAACTGTTTACCGGCAAAAATCAAACGTTGCTGATCTGGGGGGATCCCT 123422 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || ||| | ||||| | | || || ||||| Sbjct 123423 TCCTTGTCTTGAATCTTAGCCTTGACATTTTCAATAGTGTCAGAAGGCTCAACCTCCAAA 123482 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | |||||||||||||| || Sbjct 123483 GTGATGGTTTTACCAGTTAAGGTTTTCACAAAAATCTG 123520 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || || |||||||||| ||||||||| | || |||| Sbjct 124689 CGAAGACGCAATACTAAATGAAGTGTAGATTCCTTTTGGATGTTGTAGTCCGACAGAGTC 124748 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| || || || |||||||| | ||| ||||| || || ||||| Sbjct 124749 CTGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCC 124808 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| |||||| ||| | ||| || | | || || ||||| Sbjct 124809 TCTTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTATCAGAGGGCTCAACCTCCAAA 124868 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | ||||||||||| || || Sbjct 124869 GTGATGGTTTTACCAGTTAAGGTTTTCACAAAGATCTG 124906 Score = 118 bits (130), Expect = 2e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || || ||||| |||| ||||||||||| || ||| || |||||||||| || Sbjct 122636 GTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTG 122695 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || || || | ||||||||| || || ||||||||| ||||| || || Sbjct 122696 CTTGCCAGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGAT-TT 122754 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || ||| |||| || || | | ||| || ||||| ||||| ||||| |||| Sbjct 122755 TGGCTTTAACGTTCTCGATTGTATCAGACGGTTCCACCTCCAAAGTGATAGTCTTTCCCG 122814 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | |||||| || || || || Sbjct 122815 TCAAAGTTTTTACGAAGATCTG 122836 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||||| |||| ||| ||||| ||||| |||| ||| || || Sbjct 123099 GTAGATTCCTTTTGGATATTGTAATCAGACAAGGTCCTGCCATCCTCCAACTGTTTACCT 123158 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||| ||||| || ||| ||| ||||| || ||||| || ||| Sbjct 123159 GCGAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTA 123218 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | || || | || ||| || || || ||||| || || || || | ||| Sbjct 123219 ACGTTCTCAATTGTATCGGATGGTTCAACTTCTAAGGTGATGGTTTTTCCAGTCAAGGTT 123278 Query 199613 TTCACAAAAATTTG 199626 || ||||||||||| Sbjct 123279 TTTACAAAAATTTG 123292 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||| || ||||| |||| ||||| |||| || |||| Sbjct 123531 CGAAGACGCAATACCAAATGGAGAGTGGATTCCTTCTGGATATTGTAATCAGACAGAGTC 123590 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| || || ||||||||||| | ||| ||||| || || |||||| Sbjct 123591 CTGCCATCTTCCAATTGTTTACCGGCGAAGATTAAACGTTGCTGATCTGGGGGGATTCCT 123650 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| ||| ||| | || || | || ||| || ||||| Sbjct 123651 TCCTTGTCTTGGATTTTAGCCTTGACGTTTTCAATTGTATCGGATGGTTCAACTTCCAAA 123710 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||||| || || || || Sbjct 123711 GTGATAGTTTTTCCAGTCAAGGTTTTAACGAAGATCTG 123748 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 ||||| |||| || |||||| |||||||||| || |||||||||||||| | ||| ||| Sbjct 123819 TTGTAATCAGACAGAGTCCTGCCATCTTCCAATTGTTTTCCGGCGAAGATTAAACGTTGC 123878 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || || || |||||||| || || || || ||| ||| || | || || Sbjct 123879 TGATCTGGGGGGATTCCTTCCTTGTCTTGGATTTTGGCCTTAACGTTCTCAATTGTATCG 123938 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||| || || || ||||| || || || || | ||||| || || || || Sbjct 123939 GATGGTTCAACTTCTAAAGTGATGGTTTTTCCAGTCAATGTTTTAACGAAGATCTG 123994 >seq429 Length=41586 Score = 125 bits (138), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | ||| || ||||| |||| ||||||||| | || ||| | |||||| Sbjct 1125 AGGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGAGTACGTCCATCC 1184 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| ||||| || || |||||| || || Sbjct 1185 TCGAGTTGCTTACCGGCGAAGATAAGACGTTGCTGATCTGGGGGAATTCCCTCCTTGTCT 1244 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | || || || | ||||| ||| Sbjct 1245 TGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCAAGGGTGATGGTC 1304 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 |||||||| | |||||| || ||||| || |||||| Sbjct 1305 TTACCCGTCAAAGTTTTTACGAAAATCTG---CATTTT 1339 >seq4623 Length=1795199 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 98367 GCAGCTTCCGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTCGAAA 98426 ||| |||| |||||||||| || ||||||||||| ||| ||| | | | | ||||| Sbjct 1683739 GCAACTTCAGCCACCTTCCTGACGTAATTGTGCCGCTTTTCCATACGAAGACGGGCGAAA 1683798 Query 98427 CGAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGGCAAAGAGACGTCAAAATTATGA 98486 || || ||||| || ||||| || ||||| ||||| |||| | |||| || || || Sbjct 1683799 CGTAGCGCAGACTGACCTCCTCTGCCGTGCTTCTTCGGCAGATCGACGGTGAATTTGTGC 1683858 Query 98487 AGAATTTTCTTGGTGTTCCCAGAGAGAGTCGCGAAAAGAGCAGAAGAACCGTCAAGAATA 98546 |||| || ||||| || || || | ||||| || | |||||| | | | Sbjct 1683859 AGAACTTCGCGTGTGTTTCCCTGCAGTGTACCAAAAAGGGCTCCATTACCGTCCATGACA 1683918 Query 98547 ATAAATCCGAAT 98558 || ||||||||| Sbjct 1683919 ATGAATCCGAAT 1683930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178851362061550