Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nicrophorus_20vespilloides_20[refseq_20GCF_5F001412225.1_202015-10- 23] 4,650 sequences; 195,273,382 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4450 268 9e-67 seq1314 147 2e-30 seq429 114 1e-20 seq1636 95.1 1e-14 seq830 93.3 4e-14 >seq4450 Length=177458 Score = 268 bits (296), Expect = 9e-67 Identities = 608/909 (67%), Gaps = 14/909 (2%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || ||||| || || || || || || ||||| |||||||| || | || ||| | Sbjct 24025 TGGTATTCTCCAACTTTCTTTTCGAAGAAATTGGTTTTTCCGTCTATCGATATGTTATCC 24084 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT---CAGGTCGACGAGC 132723 ||||||| ||||| || | || |||| | | |||| || || | ||| Sbjct 24085 ATAAAATTGAAGGGATTTCGCGAGTGGTAGATTTCAG---CGATTCCCAAATCTGCCAGC 24141 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 ||| |||| |||||||| |||||||||| |||| | ||||||| | || | || | Sbjct 24142 AGCTTGTCAGCCACGAATTCGATGTATTCACACATAAGTCCGCAATTCATGCCGATCAAA 24201 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 || ||||| |||||||| ||||| || ||||| || || || ||| ||| Sbjct 24202 GATACAGGCAGGGCTTCGGTAAGAAACTCCTGTTCGATCTTCACGGCATCTCTGATGATG 24261 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAG 132903 | | | || | | || | ||| ||||| | ||||| |||||||| || || || Sbjct 24262 TTCTTGACCCTCTCCTCTGAAGGCTTCTGCACGACGTGCTTAAACATCAAACACGCGAAT 24321 Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 | ||| |||| | || |||||||| || | |||||| |||||| | |||||||| Sbjct 24322 TTGCAGTGCATCGCTTCATCCCTGGAGATCAACTCGTTGGAGAAAGTGAGACCGGGCATC 24381 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCG 133023 | || || || ||||| || || | |||||||||||| || ||||| | ||||| Sbjct 24382 AATCCTTTCTTCTTCAGCCAGAAGATCGAGGCGAAACTGCCGGAGAAGAAAATACCCTCC 24441 Query 133024 ACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGC 133083 || || || ||||| || | | || ||||| || ||||||| |||| ||||| Sbjct 24442 ACTGCTGCAAAAGCGACGACCCTTTCACCGAATGTCGCTTCTTGACTGGAAATCCAATTT 24501 Query 133084 AGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGG 133143 | |||||| || ||||| | ||| ||||| || || ||||| || || || | | | Sbjct 24502 AACGCCCAATCAGCCTTCTTTTTCACGCATGGAATAGTTTCAATTGCATTAAGAAGAAAA 24561 Query 133144 AGTTTCT-CTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAA---TACATTTCCGA 133199 ||||| |||| | | | || ||||| || | | || ||||| || Sbjct 24562 CTTTTCTCCTTCACATCTTTG-ATATAAGTGTCTATCA---ACAAACTGTACATCAGTGA 24617 Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259 ||||| |||||||||||| || || | ||| || ||| | ||||| | || || || Sbjct 24618 GTGTATGTTCTCCATGGCAATCTGCATGCCATAGAAGAATTTTGCCTCAATAACTTGTAC 24677 Query 133260 TTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319 ||||| | ||| | ||| ||||| ||||| ||||| || || || ||| || ||||| Sbjct 24678 TTCTTTACTGAATCTCTCTACCAGGTTTTCATTGACAATACCATCAGAGGCAGCAAAAAA 24737 Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGT 133379 |||| ||| | |||||||||||| ||| || ||| ||||| || Sbjct 24738 TGCCAACACATACTTGATGAAATGTTTCTCATTTGAAGTCATTTTTTCCCAATCTTTGTA 24797 Query 133380 GTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 |||||| |||| || || || | || ||||||| || ||||| |||| || ||||| Sbjct 24798 GTCCTTCGACAAATCAACTTCATGAACCTTCCAAAATGAGGCCTCAGCTTGTTCATACAT 24857 Query 133440 ACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAA 133499 |||||||||| ||| || || || | ||| | || |||||| |||||||| Sbjct 24858 CTTCCACATGTCATTATAGACGATTGGGAACACTACATAACGTTTGGGGTTATCGCGCAA 24917 Query 133500 CAGCGGCTC 133508 || ||||| Sbjct 24918 CAAAGGCTC 24926 >seq1314 Length=49468 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || ||||| || ||||||||| |||| |||||| || || Sbjct 22234 ATGCAAATTTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTCGAGGTCGAGCCCTCC 22175 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | || | || |||| |||||||||||||| ||| | || || Sbjct 22174 GATACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 22115 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || ||||| || || | ||||||||| |||||||||| Sbjct 22114 CAACGTTTGATCTTCGCCGGTAAGCAGCTCGAGGATGGACGCACCCTCTCCGACTACAAC 22055 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || |||||| ||||| Sbjct 22054 ATCCAGAAGGAGTCGACCCTCCACTTGGTGTTGCGT 22019 >seq429 Length=41586 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||||||||| | ||||| || ||||||||| | || |||||| | Sbjct 1339 AAAATGCAGATTTTCGTAAAAACTTTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 1280 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | | | || | || |||| ||||| |||||||||||| | || Sbjct 1279 TCCGATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGAT 1220 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | ||| || || || || || || | || || || |||||| Sbjct 1219 CAGCAACGTCTTATCTTCGCCGGTAAGCAACTCGAGGATGGACGTACTCTGTCGGACTAC 1160 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| |||||| | || |||| ||||| || || Sbjct 1159 AACATCCAGAAGGAATCCACTTTGCACTTGGTCCTCCG 1122 >seq1636 Length=121147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/363 (66%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 107472 ATTCCGATAATGCCGCACGCGAGCCGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGA 107531 || ||||| | |||||| ||||| || |||| | ||| || ||||||||||| | Sbjct 2791 ATGCCGATGACGCCGCAAGCGAGACGAGCGCCGGCGTTTCCTGTGGTCTTGCTGAGTTCG 2850 Query 107532 TGGTCGGTGAGGCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATG 107591 || || |||| ||||| || | ||| ||||| || | ||||| | |||| Sbjct 2851 TGTCCGCCCGCTCCCATGTCGTCGGGATCGGCGTGGACGACGAGGGTGCGTCCCAGGATG 2910 Query 107592 CTGTGCGGGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCG 107651 |||| |||| |||| | | | ||| | | | |||| || || ||| | Sbjct 2911 CTGTTGTTGCCGAACAACGAGATCTCCTTGTCGGAGATGGACACCATGGCGACGCCGTTG 2970 Query 107652 CGGCCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCG 107711 | || ||| || | |||||||||||| |||||||| | | |||| | ||| || Sbjct 2971 CTACCGGCCT-CT--ACGTTGCCCAGGTCACCGACGTGACGTACGTCGGAGGTGGGACCG 3027 Query 107712 CCGTGGTCGCGCTT---CGTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTC 107768 ||||| || ||| | ||| ||||| || |||||||| |||| |||||| | Sbjct 3028 CCGTGATC---CTTGCCCTGCGGATTGAAGTGGGGCCCGGCCGAGATGCAACCGTTGGTG 3084 Query 107769 GCGTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCGAGCACGTAG 107828 ||| ||||||||||| | |||||| ||||| ||||| || || |||| ||| | | Sbjct 3085 TTGTCACCGAACTCGTGGATGTGGAATCCGTGGAGGCCCTGCTTCAAGCCGGACACCTCG 3144 Query 107829 CCG 107831 ||| Sbjct 3145 CCG 3147 >seq830 Length=194395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| | || || |||||||||||| | || || || | || Sbjct 123295 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATCACCTTAGAAGTTGAACCATCC 123236 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||| | ||||| | ||||| || || ||||| | || || Sbjct 123235 GATACAATTGAGAACG-TTAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 123177 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || |||||| |||| || | | ||| | || ||||| Sbjct 123176 GCAACGTTTGATCTTCGCAGGTAAACAGTTGGAGGATGGCAGGACCTTGTCTGATTACAA 123117 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || | |||||||| ||||| | ||||||| Sbjct 123116 TATCCAAAAGGAATCTACATTACATTTGGTTTTGCGTCTTCGAGGCGG 123069 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| | ||||| || || ||||| | || || || | | Sbjct 122839 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACTATCACTTTGGAGGTGGAACCGTCT 122780 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||||| ||||||| || || || |||||||| | || || Sbjct 122779 GATACAATCGAGAACG-TTAAAGCCAAAATCCAGGATAAGGAAGGAATTCCACCAGATCA 122721 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || ||||| || |||| || | | || || |||||||| Sbjct 122720 GCAGCGTTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTACAA 122661 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || || ||||| | |||||| | || || Sbjct 122660 CATCCAGAAGGAATCAACCCTTCACTTGGTTTTACGTTTGCGTGGAGG 122613 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || |||||||| || | || || || | | Sbjct 124225 ATGCAGATCTTCGTTAAAACATTGACTGGAAAAACCATTACTTTGGAAGTTGAACCATCT 124166 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||||| ||||| || ||||| || | || || Sbjct 124165 GACACAATTGAAAACG-TCAAGGCCAAAATCCAAGACAAGGAAGGAATCCCTCCAGATCA 124107 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || ||||| |||| || | | || || |||||||| Sbjct 124106 GCAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCAGACTACAA 124047 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || |||||||| ||||| Sbjct 124046 CATCCAAAAGGAATCTACCCTTCATTTGGTATTGCGT 124010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||||||||| | || || ||| || | Sbjct 124909 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAAACCATCACTTTGGAGGTTGAGCCCTCT 124850 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | || || | |||||||||||||| || | || || Sbjct 124849 GATACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAAGAGGGAATCCCACCTGATCAG 124790 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || ||||| |||| || | | || || ||||||||| Sbjct 124789 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124730 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||| || ||||| Sbjct 124729 ATCCAAAAGGAATCTACACTTCATTTAGTATTGCGT 124694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || |||||||| ||| | || || || | | Sbjct 124681 ATGCAGATCTTTGTTAAAACCTTGACTGGAAAAACCATTACCTTGGAAGTTGAACCATCT 124622 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| ||||||| ||||| || ||||| || | || ||| Sbjct 124621 GACACAATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 124562 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || || |||| || | | || || ||||||||| Sbjct 124561 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGGACTCTGTCGGACTACAAC 124502 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||| | || || |||||||| ||||| Sbjct 124501 ATTCAAAAGGAATCCACCCTTCATTTGGTATTGCGT 124466 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | || || ||||| || ||| | || || || | | Sbjct 124453 ATGCAGATCTTCGTTAAAACCTTGACTGGAAAAACTATTACCTTGGAAGTTGAACCATCT 124394 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||||||| ||||| || |||||||| | || || Sbjct 124393 GACACAATTGAAAACG-TAAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCA 124335 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | || || ||||| |||| || | | || || ||||||||| Sbjct 124334 GCAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTCTGTCCGACTACAA 124275 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || ||||| || ||||| Sbjct 124274 CATCCAGAAGGAATCTACTCTCCATTTAGTATTGCGT 124238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500143727456000